A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.4
nTPM
Monaco:
26.6
nTPM
Schmiedel:
30.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.4
HPA sample
nTPM
NK-cell nTPM: 15.4
Samples: 6
Max nTPM: 29.9
Min nTPM: 9.1
P10809_1013
9.6
P10809_1033
19.1
P10809_1052
13.0
P10809_1071
11.9
P10809_1093
29.9
P10809_1103
9.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.6
Monaco sample
nTPM
NK-cell nTPM: 26.6
Samples: 4
Max nTPM: 32.4
Min nTPM: 20.2
RHH5316_R3683
24.0
RHH5224_R3596
29.9
RHH5253_R3625
20.2
RHH5282_R3654
32.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.7
Schmiedel sample id
TPM
NK-cell TPM: 30.7
Samples: 90
Max TPM: 40.4
Min TPM: 23.2
NK_1
40.4
NK_2
37.9
NK_3
37.7
NK_4
36.6
NK_5
36.3
NK_6
36.1
NK_7
34.9
NK_8
34.9
NK_9
34.8
NK_10
34.7
NK_11
34.6
NK_12
34.4
NK_13
34.2
NK_14
33.8
NK_15
33.8
NK_16
33.7
NK_17
33.6
NK_18
33.6
NK_19
33.2
NK_20
33.1
NK_21
33.1
NK_22
33.0
NK_23
33.0
NK_24
33.0
NK_25
32.9
NK_26
32.9
NK_27
32.6
NK_28
32.5
NK_29
32.4
NK_30
32.3
NK_31
32.2
NK_32
32.1
NK_33
32.0
NK_34
32.0
NK_35
32.0
NK_36
31.7
NK_37
31.6
NK_38
31.4
NK_39
31.2
NK_40
31.1
NK_41
31.1
NK_42
31.0
NK_43
30.9
NK_44
30.7
NK_45
30.6
NK_46
30.6
NK_47
30.6
NK_48
30.6
NK_49
30.5
NK_50
30.5
NK_51
30.4
NK_52
30.1
NK_53
30.0
NK_54
29.9
NK_55
29.8
NK_56
29.7
NK_57
29.5
NK_58
29.5
NK_59
29.5
NK_60
29.5
NK_61
29.1
NK_62
29.1
NK_63
29.1
NK_64
29.0
NK_65
28.8
NK_66
28.6
NK_67
28.6
NK_68
28.5
NK_69
28.5
NK_70
28.2
NK_71
27.9
NK_72
27.7
NK_73
27.7
NK_74
27.5
NK_75
27.5
NK_76
27.4
NK_77
27.3
NK_78
27.2
NK_79
27.1
NK_80
27.1
NK_81
26.4
NK_82
26.0
NK_83
25.9
NK_84
25.8
NK_85
24.6
NK_86
24.6
NK_87
24.1
NK_88
23.8
NK_89
23.7
NK_90
23.2
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