A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.0
nTPM
Monaco:
33.3
nTPM
Schmiedel:
15.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.0
HPA sample
nTPM
Classical monocyte nTPM: 11.7
Samples: 6
Max nTPM: 15.9
Min nTPM: 7.4
P10809_1003
13.8
P10809_1020
12.6
P10809_1039
15.9
P10809_1058
7.4
P10809_1080
10.9
P10809_1107
9.4
Intermediate monocyte nTPM: 17.1
Samples: 6
Max nTPM: 23.6
Min nTPM: 11.7
P10809_1004
18.3
P10809_1023
23.6
P10809_1042
15.5
P10809_1061
21.2
P10809_1081
12.5
P10809_1108
11.7
Non-classical monocyte nTPM: 25.0
Samples: 5
Max nTPM: 43.0
Min nTPM: 14.9
P10809_1005
27.2
P10809_1053
24.4
P10809_1072
43.0
P10809_1082
14.9
P10809_1109
15.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.3
Monaco sample
nTPM
Classical monocyte nTPM: 27.8
Samples: 4
Max nTPM: 30.9
Min nTPM: 19.1
RHH5313_R3680
19.1
RHH5221_R3593
30.9
RHH5250_R3622
30.2
RHH5279_R3651
30.8
Intermediate monocyte nTPM: 33.3
Samples: 4
Max nTPM: 39.2
Min nTPM: 30.1
RHH5314_R3681
39.2
RHH5222_R3594
30.1
RHH5251_R3623
30.3
RHH5280_R3652
33.7
Non-classical monocyte nTPM: 28.7
Samples: 4
Max nTPM: 35.5
Min nTPM: 23.8
RHH5315_R3682
28.8
RHH5223_R3595
23.8
RHH5252_R3624
35.5
RHH5281_R3653
26.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
Schmiedel sample id
TPM
Classical monocyte TPM: 13.8
Samples: 91
Max TPM: 17.3
Min TPM: 10.6
MONOCYTES_1
17.3
MONOCYTES_2
16.9
MONOCYTES_3
16.7
MONOCYTES_4
16.5
MONOCYTES_5
16.3
MONOCYTES_6
16.2
MONOCYTES_7
16.1
MONOCYTES_8
15.9
MONOCYTES_9
15.8
MONOCYTES_10
15.8
MONOCYTES_11
15.7
MONOCYTES_12
15.7
MONOCYTES_13
15.6
MONOCYTES_14
15.5
MONOCYTES_15
15.4
MONOCYTES_16
15.3
MONOCYTES_17
15.2
MONOCYTES_18
15.2
MONOCYTES_19
15.2
MONOCYTES_20
15.0
MONOCYTES_21
15.0
MONOCYTES_22
15.0
MONOCYTES_23
14.9
MONOCYTES_24
14.8
MONOCYTES_25
14.8
MONOCYTES_26
14.8
MONOCYTES_27
14.8
MONOCYTES_28
14.6
MONOCYTES_29
14.6
MONOCYTES_30
14.5
MONOCYTES_31
14.5
MONOCYTES_32
14.4
MONOCYTES_33
14.4
MONOCYTES_34
14.3
MONOCYTES_35
14.2
MONOCYTES_36
14.2
MONOCYTES_37
14.2
MONOCYTES_38
14.1
MONOCYTES_39
14.1
MONOCYTES_40
14.1
MONOCYTES_41
14.0
MONOCYTES_42
13.9
MONOCYTES_43
13.8
MONOCYTES_44
13.8
MONOCYTES_45
13.8
MONOCYTES_46
13.8
MONOCYTES_47
13.8
MONOCYTES_48
13.7
MONOCYTES_49
13.6
MONOCYTES_50
13.6
MONOCYTES_51
13.6
MONOCYTES_52
13.6
MONOCYTES_53
13.5
MONOCYTES_54
13.4
MONOCYTES_55
13.4
MONOCYTES_56
13.4
MONOCYTES_57
13.3
MONOCYTES_58
13.2
MONOCYTES_59
13.2
MONOCYTES_60
13.1
MONOCYTES_61
13.0
MONOCYTES_62
12.9
MONOCYTES_63
12.9
MONOCYTES_64
12.8
MONOCYTES_65
12.7
MONOCYTES_66
12.6
MONOCYTES_67
12.5
MONOCYTES_68
12.5
MONOCYTES_69
12.4
MONOCYTES_70
12.3
MONOCYTES_71
12.3
MONOCYTES_72
12.3
MONOCYTES_73
12.2
MONOCYTES_74
12.2
MONOCYTES_75
12.1
MONOCYTES_76
12.1
MONOCYTES_77
12.1
MONOCYTES_78
12.0
MONOCYTES_79
11.9
MONOCYTES_80
11.8
MONOCYTES_81
11.8
MONOCYTES_82
11.8
MONOCYTES_83
11.8
MONOCYTES_84
11.8
MONOCYTES_85
11.7
MONOCYTES_86
11.6
MONOCYTES_87
11.6
MONOCYTES_88
11.3
MONOCYTES_89
11.2
MONOCYTES_90
10.7
MONOCYTES_91
10.6
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Non-classical monocyte TPM: 15.9
Samples: 90
Max TPM: 20.2
Min TPM: 11.7
M2_1
20.2
M2_2
20.0
M2_3
19.9
M2_4
19.5
M2_5
19.3
M2_6
19.1
M2_7
18.8
M2_8
18.5
M2_9
18.3
M2_10
18.1
M2_11
18.0
M2_12
18.0
M2_13
17.9
M2_14
17.9
M2_15
17.7
M2_16
17.5
M2_17
17.5
M2_18
17.5
M2_19
17.4
M2_20
17.4
M2_21
17.3
M2_22
17.2
M2_23
17.2
M2_24
16.9
M2_25
16.8
M2_26
16.8
M2_27
16.7
M2_28
16.7
M2_29
16.6
M2_30
16.6
M2_31
16.5
M2_32
16.5
M2_33
16.5
M2_34
16.4
M2_35
16.4
M2_36
16.4
M2_37
16.4
M2_38
16.3
M2_39
16.2
M2_40
16.2
M2_41
16.2
M2_42
16.1
M2_43
16.1
M2_44
16.1
M2_45
15.9
M2_46
15.8
M2_47
15.8
M2_48
15.8
M2_49
15.8
M2_50
15.7
M2_51
15.7
M2_52
15.6
M2_53
15.5
M2_54
15.5
M2_55
15.5
M2_56
15.4
M2_57
15.4
M2_58
15.3
M2_59
15.2
M2_60
15.1
M2_61
15.1
M2_62
15.0
M2_63
15.0
M2_64
14.9
M2_65
14.8
M2_66
14.8
M2_67
14.8
M2_68
14.7
M2_69
14.6
M2_70
14.6
M2_71
14.2
M2_72
14.1
M2_73
14.1
M2_74
14.1
M2_75
13.9
M2_76
13.9
M2_77
13.7
M2_78
13.6
M2_79
13.6
M2_80
13.5
M2_81
13.4
M2_82
13.3
M2_83
13.3
M2_84
13.1
M2_85
13.1
M2_86
12.9
M2_87
12.6
M2_88
12.5
M2_89
12.3
M2_90
11.7
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