A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
105.6
nTPM
Monaco:
74.4
nTPM
Schmiedel:
13.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.6
HPA sample
nTPM
Memory B-cell nTPM: 93.7
Samples: 6
Max nTPM: 234.5
Min nTPM: 51.4
P10809_1017
51.4
P10809_1025
70.9
P10809_1044
234.5
P10809_1063
58.5
P10809_1092
75.1
P10809_1105
71.8
Naive B-cell nTPM: 105.6
Samples: 6
Max nTPM: 262.6
Min nTPM: 44.9
P10809_1011
44.9
P10809_1029
76.9
P10809_1048
262.6
P10809_1067
83.7
P10809_1091
86.5
P10809_1104
78.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 44.6
Samples: 4
Max nTPM: 78.7
Min nTPM: 23.0
RHH5310_R3677
78.7
RHH5218_R3590
23.4
RHH5247_R3619
53.2
RHH5276_R3648
23.0
Naive B-cell nTPM: 36.1
Samples: 4
Max nTPM: 48.7
Min nTPM: 17.1
RHH5308_R3675
41.6
RHH5216_R3588
48.7
RHH5245_R3617
17.1
RHH5274_R3646
36.9
Non-switched memory B-cell nTPM: 41.7
Samples: 4
Max nTPM: 59.8
Min nTPM: 19.3
RHH5309_R3676
44.9
RHH5217_R3589
42.9
RHH5246_R3618
59.8
RHH5275_R3647
19.3
Plasmablast nTPM: 74.5
Samples: 4
Max nTPM: 94.3
Min nTPM: 48.6
RHH5312_R3679
67.9
RHH5220_R3592
87.0
RHH5249_R3621
94.3
RHH5278_R3650
48.6
Switched memory B-cell nTPM: 48.0
Samples: 4
Max nTPM: 73.4
Min nTPM: 22.8
RHH5311_R3678
73.4
RHH5219_R3591
60.4
RHH5248_R3620
35.5
RHH5277_R3649
22.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
Schmiedel sample id
TPM
Naive B-cell TPM: 13.5
Samples: 91
Max TPM: 25.3
Min TPM: 2.2
B_CELL_NAIVE_1
25.3
B_CELL_NAIVE_2
24.9
B_CELL_NAIVE_3
23.8
B_CELL_NAIVE_4
23.2
B_CELL_NAIVE_5
22.1
B_CELL_NAIVE_6
22.0
B_CELL_NAIVE_7
21.8
B_CELL_NAIVE_8
21.3
B_CELL_NAIVE_9
21.2
B_CELL_NAIVE_10
20.9
B_CELL_NAIVE_11
19.8
B_CELL_NAIVE_12
19.6
B_CELL_NAIVE_13
19.6
B_CELL_NAIVE_14
19.5
B_CELL_NAIVE_15
19.4
B_CELL_NAIVE_16
19.3
B_CELL_NAIVE_17
19.0
B_CELL_NAIVE_18
18.7
B_CELL_NAIVE_19
18.2
B_CELL_NAIVE_20
17.9
B_CELL_NAIVE_21
17.7
B_CELL_NAIVE_22
17.7
B_CELL_NAIVE_23
17.6
B_CELL_NAIVE_24
17.5
B_CELL_NAIVE_25
17.5
B_CELL_NAIVE_26
17.4
B_CELL_NAIVE_27
17.4
B_CELL_NAIVE_28
17.3
B_CELL_NAIVE_29
17.3
B_CELL_NAIVE_30
17.1
B_CELL_NAIVE_31
17.1
B_CELL_NAIVE_32
17.1
B_CELL_NAIVE_33
16.9
B_CELL_NAIVE_34
16.9
B_CELL_NAIVE_35
16.4
B_CELL_NAIVE_36
16.4
B_CELL_NAIVE_37
15.8
B_CELL_NAIVE_38
15.4
B_CELL_NAIVE_39
15.2
B_CELL_NAIVE_40
15.2
B_CELL_NAIVE_41
15.0
B_CELL_NAIVE_42
14.9
B_CELL_NAIVE_43
14.9
B_CELL_NAIVE_44
14.1
B_CELL_NAIVE_45
14.0
B_CELL_NAIVE_46
14.0
B_CELL_NAIVE_47
13.8
B_CELL_NAIVE_48
13.8
B_CELL_NAIVE_49
13.5
B_CELL_NAIVE_50
13.1
B_CELL_NAIVE_51
13.1
B_CELL_NAIVE_52
13.0
B_CELL_NAIVE_53
12.9
B_CELL_NAIVE_54
12.5
B_CELL_NAIVE_55
11.6
B_CELL_NAIVE_56
11.2
B_CELL_NAIVE_57
10.8
B_CELL_NAIVE_58
10.7
B_CELL_NAIVE_59
10.7
B_CELL_NAIVE_60
10.3
B_CELL_NAIVE_61
10.2
B_CELL_NAIVE_62
10.2
B_CELL_NAIVE_63
9.9
B_CELL_NAIVE_64
9.6
B_CELL_NAIVE_65
9.4
B_CELL_NAIVE_66
9.3
B_CELL_NAIVE_67
9.1
B_CELL_NAIVE_68
8.9
B_CELL_NAIVE_69
8.8
B_CELL_NAIVE_70
8.6
B_CELL_NAIVE_71
8.6
B_CELL_NAIVE_72
7.9
B_CELL_NAIVE_73
7.8
B_CELL_NAIVE_74
7.6
B_CELL_NAIVE_75
7.6
B_CELL_NAIVE_76
7.4
B_CELL_NAIVE_77
6.8
B_CELL_NAIVE_78
6.8
B_CELL_NAIVE_79
6.7
B_CELL_NAIVE_80
6.6
B_CELL_NAIVE_81
6.6
B_CELL_NAIVE_82
5.9
B_CELL_NAIVE_83
5.8
B_CELL_NAIVE_84
4.7
B_CELL_NAIVE_85
4.7
B_CELL_NAIVE_86
4.6
B_CELL_NAIVE_87
4.5
B_CELL_NAIVE_88
4.4
B_CELL_NAIVE_89
4.2
B_CELL_NAIVE_90
4.1
B_CELL_NAIVE_91
2.2
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