A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
115.7
nTPM
Monaco:
57.3
nTPM
Schmiedel:
30.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
115.7
HPA sample
nTPM
Classical monocyte nTPM: 106.0
Samples: 6
Max nTPM: 141.7
Min nTPM: 84.4
P10809_1003
87.8
P10809_1020
103.4
P10809_1039
141.7
P10809_1058
84.4
P10809_1080
103.5
P10809_1107
115.3
Intermediate monocyte nTPM: 107.4
Samples: 6
Max nTPM: 132.8
Min nTPM: 77.6
P10809_1004
77.6
P10809_1023
122.4
P10809_1042
132.8
P10809_1061
93.7
P10809_1081
87.9
P10809_1108
130.0
Non-classical monocyte nTPM: 115.8
Samples: 5
Max nTPM: 169.4
Min nTPM: 77.2
P10809_1005
77.2
P10809_1053
120.6
P10809_1072
169.4
P10809_1082
88.7
P10809_1109
122.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.3
Monaco sample
nTPM
Classical monocyte nTPM: 57.3
Samples: 4
Max nTPM: 80.9
Min nTPM: 34.0
RHH5313_R3680
64.0
RHH5221_R3593
34.0
RHH5250_R3622
80.9
RHH5279_R3651
50.3
Intermediate monocyte nTPM: 47.0
Samples: 4
Max nTPM: 66.7
Min nTPM: 27.3
RHH5314_R3681
66.7
RHH5222_R3594
35.5
RHH5251_R3623
27.3
RHH5280_R3652
58.4
Non-classical monocyte nTPM: 37.0
Samples: 4
Max nTPM: 40.2
Min nTPM: 34.0
RHH5315_R3682
36.0
RHH5223_R3595
34.0
RHH5252_R3624
37.6
RHH5281_R3653
40.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.6
Schmiedel sample id
TPM
Classical monocyte TPM: 30.6
Samples: 91
Max TPM: 51.6
Min TPM: 16.4
MONOCYTES_1
51.6
MONOCYTES_2
48.0
MONOCYTES_3
46.8
MONOCYTES_4
44.9
MONOCYTES_5
44.7
MONOCYTES_6
44.1
MONOCYTES_7
44.1
MONOCYTES_8
43.6
MONOCYTES_9
43.2
MONOCYTES_10
42.7
MONOCYTES_11
42.3
MONOCYTES_12
42.2
MONOCYTES_13
42.2
MONOCYTES_14
41.4
MONOCYTES_15
40.7
MONOCYTES_16
40.3
MONOCYTES_17
40.0
MONOCYTES_18
39.8
MONOCYTES_19
39.6
MONOCYTES_20
38.3
MONOCYTES_21
38.0
MONOCYTES_22
38.0
MONOCYTES_23
37.8
MONOCYTES_24
37.5
MONOCYTES_25
36.9
MONOCYTES_26
36.7
MONOCYTES_27
36.6
MONOCYTES_28
36.0
MONOCYTES_29
34.8
MONOCYTES_30
34.7
MONOCYTES_31
34.2
MONOCYTES_32
33.2
MONOCYTES_33
32.4
MONOCYTES_34
32.2
MONOCYTES_35
32.0
MONOCYTES_36
32.0
MONOCYTES_37
31.6
MONOCYTES_38
31.6
MONOCYTES_39
31.5
MONOCYTES_40
31.3
MONOCYTES_41
30.7
MONOCYTES_42
29.8
MONOCYTES_43
29.0
MONOCYTES_44
28.8
MONOCYTES_45
28.7
MONOCYTES_46
28.5
MONOCYTES_47
28.4
MONOCYTES_48
28.0
MONOCYTES_49
28.0
MONOCYTES_50
27.6
MONOCYTES_51
27.4
MONOCYTES_52
27.3
MONOCYTES_53
27.3
MONOCYTES_54
27.3
MONOCYTES_55
27.2
MONOCYTES_56
26.7
MONOCYTES_57
26.4
MONOCYTES_58
26.4
MONOCYTES_59
26.2
MONOCYTES_60
26.1
MONOCYTES_61
26.0
MONOCYTES_62
25.9
MONOCYTES_63
25.8
MONOCYTES_64
25.6
MONOCYTES_65
25.6
MONOCYTES_66
25.4
MONOCYTES_67
24.8
MONOCYTES_68
24.7
MONOCYTES_69
24.7
MONOCYTES_70
24.6
MONOCYTES_71
24.6
MONOCYTES_72
24.5
MONOCYTES_73
24.4
MONOCYTES_74
24.2
MONOCYTES_75
23.2
MONOCYTES_76
22.4
MONOCYTES_77
21.4
MONOCYTES_78
21.2
MONOCYTES_79
20.6
MONOCYTES_80
19.9
MONOCYTES_81
19.8
MONOCYTES_82
19.7
MONOCYTES_83
19.5
MONOCYTES_84
19.4
MONOCYTES_85
18.0
MONOCYTES_86
17.8
MONOCYTES_87
17.0
MONOCYTES_88
16.8
MONOCYTES_89
16.6
MONOCYTES_90
16.5
MONOCYTES_91
16.4
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Non-classical monocyte TPM: 20.3
Samples: 90
Max TPM: 44.5
Min TPM: 5.8
M2_1
44.5
M2_2
38.2
M2_3
34.7
M2_4
34.1
M2_5
33.0
M2_6
32.3
M2_7
32.1
M2_8
31.0
M2_9
31.0
M2_10
30.2
M2_11
30.1
M2_12
28.9
M2_13
28.9
M2_14
28.8
M2_15
28.5
M2_16
28.3
M2_17
27.9
M2_18
27.7
M2_19
27.4
M2_20
26.7
M2_21
26.6
M2_22
26.3
M2_23
26.1
M2_24
25.5
M2_25
24.9
M2_26
24.6
M2_27
24.6
M2_28
23.4
M2_29
23.3
M2_30
23.3
M2_31
22.8
M2_32
22.6
M2_33
22.6
M2_34
22.3
M2_35
22.2
M2_36
22.1
M2_37
21.8
M2_38
21.8
M2_39
21.8
M2_40
21.4
M2_41
21.4
M2_42
20.9
M2_43
20.7
M2_44
20.7
M2_45
20.5
M2_46
20.5
M2_47
20.3
M2_48
20.0
M2_49
19.6
M2_50
19.4
M2_51
19.2
M2_52
19.1
M2_53
18.1
M2_54
18.0
M2_55
17.9
M2_56
17.7
M2_57
17.6
M2_58
17.6
M2_59
16.8
M2_60
16.7
M2_61
16.7
M2_62
16.4
M2_63
16.2
M2_64
16.1
M2_65
16.0
M2_66
15.7
M2_67
15.3
M2_68
14.3
M2_69
14.2
M2_70
14.0
M2_71
13.8
M2_72
12.9
M2_73
12.6
M2_74
12.3
M2_75
11.9
M2_76
11.9
M2_77
11.7
M2_78
10.9
M2_79
10.8
M2_80
10.5
M2_81
9.9
M2_82
9.8
M2_83
9.1
M2_84
9.0
M2_85
8.6
M2_86
8.1
M2_87
6.5
M2_88
6.0
M2_89
5.9
M2_90
5.8
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