A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
38.1
nTPM
Monaco:
91.7
nTPM
Schmiedel:
133.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.1
HPA sample
nTPM
Memory B-cell nTPM: 38.1
Samples: 6
Max nTPM: 43.9
Min nTPM: 31.1
P10809_1017
31.1
P10809_1025
35.4
P10809_1044
43.9
P10809_1063
40.3
P10809_1092
38.4
P10809_1105
39.4
Naive B-cell nTPM: 36.0
Samples: 6
Max nTPM: 44.2
Min nTPM: 29.8
P10809_1011
31.3
P10809_1029
34.6
P10809_1048
37.5
P10809_1067
29.8
P10809_1091
44.2
P10809_1104
38.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 79.4
Samples: 4
Max nTPM: 95.6
Min nTPM: 63.7
RHH5310_R3677
92.5
RHH5218_R3590
63.7
RHH5247_R3619
65.8
RHH5276_R3648
95.6
Naive B-cell nTPM: 79.4
Samples: 4
Max nTPM: 104.8
Min nTPM: 57.1
RHH5308_R3675
80.9
RHH5216_R3588
104.8
RHH5245_R3617
57.1
RHH5274_R3646
75.0
Non-switched memory B-cell nTPM: 85.7
Samples: 4
Max nTPM: 90.8
Min nTPM: 80.6
RHH5309_R3676
82.6
RHH5217_R3589
88.7
RHH5246_R3618
90.8
RHH5275_R3647
80.6
Plasmablast nTPM: 74.7
Samples: 4
Max nTPM: 91.6
Min nTPM: 64.1
RHH5312_R3679
64.1
RHH5220_R3592
91.6
RHH5249_R3621
67.0
RHH5278_R3650
76.2
Switched memory B-cell nTPM: 91.7
Samples: 4
Max nTPM: 118.7
Min nTPM: 66.9
RHH5311_R3678
66.9
RHH5219_R3591
118.7
RHH5248_R3620
89.9
RHH5277_R3649
91.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
133.5
Schmiedel sample id
TPM
Naive B-cell TPM: 133.5
Samples: 91
Max TPM: 155.0
Min TPM: 99.4
B_CELL_NAIVE_1
155.0
B_CELL_NAIVE_2
154.6
B_CELL_NAIVE_3
154.5
B_CELL_NAIVE_4
153.2
B_CELL_NAIVE_5
153.0
B_CELL_NAIVE_6
151.4
B_CELL_NAIVE_7
151.0
B_CELL_NAIVE_8
150.6
B_CELL_NAIVE_9
149.4
B_CELL_NAIVE_10
149.4
B_CELL_NAIVE_11
146.5
B_CELL_NAIVE_12
146.1
B_CELL_NAIVE_13
145.8
B_CELL_NAIVE_14
144.7
B_CELL_NAIVE_15
144.5
B_CELL_NAIVE_16
144.4
B_CELL_NAIVE_17
144.2
B_CELL_NAIVE_18
143.7
B_CELL_NAIVE_19
143.3
B_CELL_NAIVE_20
142.5
B_CELL_NAIVE_21
142.5
B_CELL_NAIVE_22
142.2
B_CELL_NAIVE_23
142.0
B_CELL_NAIVE_24
141.8
B_CELL_NAIVE_25
141.5
B_CELL_NAIVE_26
141.2
B_CELL_NAIVE_27
140.3
B_CELL_NAIVE_28
140.2
B_CELL_NAIVE_29
139.8
B_CELL_NAIVE_30
139.4
B_CELL_NAIVE_31
139.1
B_CELL_NAIVE_32
137.7
B_CELL_NAIVE_33
137.6
B_CELL_NAIVE_34
137.3
B_CELL_NAIVE_35
137.2
B_CELL_NAIVE_36
136.9
B_CELL_NAIVE_37
136.7
B_CELL_NAIVE_38
136.6
B_CELL_NAIVE_39
136.3
B_CELL_NAIVE_40
135.9
B_CELL_NAIVE_41
135.9
B_CELL_NAIVE_42
135.7
B_CELL_NAIVE_43
135.5
B_CELL_NAIVE_44
135.0
B_CELL_NAIVE_45
134.9
B_CELL_NAIVE_46
134.8
B_CELL_NAIVE_47
134.4
B_CELL_NAIVE_48
134.3
B_CELL_NAIVE_49
134.0
B_CELL_NAIVE_50
133.7
B_CELL_NAIVE_51
132.5
B_CELL_NAIVE_52
132.2
B_CELL_NAIVE_53
131.8
B_CELL_NAIVE_54
131.1
B_CELL_NAIVE_55
130.2
B_CELL_NAIVE_56
129.3
B_CELL_NAIVE_57
128.7
B_CELL_NAIVE_58
128.1
B_CELL_NAIVE_59
128.1
B_CELL_NAIVE_60
127.4
B_CELL_NAIVE_61
127.3
B_CELL_NAIVE_62
127.2
B_CELL_NAIVE_63
127.2
B_CELL_NAIVE_64
127.1
B_CELL_NAIVE_65
126.2
B_CELL_NAIVE_66
126.1
B_CELL_NAIVE_67
126.1
B_CELL_NAIVE_68
124.4
B_CELL_NAIVE_69
124.0
B_CELL_NAIVE_70
123.9
B_CELL_NAIVE_71
123.5
B_CELL_NAIVE_72
123.4
B_CELL_NAIVE_73
123.2
B_CELL_NAIVE_74
122.9
B_CELL_NAIVE_75
122.8
B_CELL_NAIVE_76
122.6
B_CELL_NAIVE_77
122.5
B_CELL_NAIVE_78
122.4
B_CELL_NAIVE_79
121.8
B_CELL_NAIVE_80
121.8
B_CELL_NAIVE_81
121.7
B_CELL_NAIVE_82
121.4
B_CELL_NAIVE_83
118.8
B_CELL_NAIVE_84
117.1
B_CELL_NAIVE_85
116.9
B_CELL_NAIVE_86
116.9
B_CELL_NAIVE_87
115.1
B_CELL_NAIVE_88
114.9
B_CELL_NAIVE_89
114.5
B_CELL_NAIVE_90
111.9
B_CELL_NAIVE_91
99.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
