A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
47.2
nTPM
Monaco:
116.1
nTPM
Schmiedel:
122.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.2
HPA sample
nTPM
Classical monocyte nTPM: 30.6
Samples: 6
Max nTPM: 36.8
Min nTPM: 24.5
P10809_1003
30.0
P10809_1020
36.5
P10809_1039
36.8
P10809_1058
24.5
P10809_1080
29.4
P10809_1107
26.5
Intermediate monocyte nTPM: 36.8
Samples: 6
Max nTPM: 46.3
Min nTPM: 29.4
P10809_1004
35.3
P10809_1023
46.3
P10809_1042
46.2
P10809_1061
29.4
P10809_1081
31.4
P10809_1108
32.1
Non-classical monocyte nTPM: 47.1
Samples: 5
Max nTPM: 70.5
Min nTPM: 33.1
P10809_1005
42.5
P10809_1053
50.2
P10809_1072
70.5
P10809_1082
33.1
P10809_1109
39.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.1
Monaco sample
nTPM
Classical monocyte nTPM: 106.3
Samples: 4
Max nTPM: 123.2
Min nTPM: 98.0
RHH5313_R3680
98.0
RHH5221_R3593
123.2
RHH5250_R3622
102.2
RHH5279_R3651
101.8
Intermediate monocyte nTPM: 99.7
Samples: 4
Max nTPM: 119.6
Min nTPM: 88.1
RHH5314_R3681
93.5
RHH5222_R3594
119.6
RHH5251_R3623
97.4
RHH5280_R3652
88.1
Non-classical monocyte nTPM: 116.2
Samples: 4
Max nTPM: 128.8
Min nTPM: 103.7
RHH5315_R3682
103.7
RHH5223_R3595
128.8
RHH5252_R3624
120.1
RHH5281_R3653
112.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.7
Schmiedel sample id
TPM
Classical monocyte TPM: 115.1
Samples: 91
Max TPM: 142.3
Min TPM: 90.9
MONOCYTES_1
142.3
MONOCYTES_2
132.7
MONOCYTES_3
131.9
MONOCYTES_4
130.7
MONOCYTES_5
130.1
MONOCYTES_6
129.5
MONOCYTES_7
128.3
MONOCYTES_8
127.9
MONOCYTES_9
127.9
MONOCYTES_10
127.5
MONOCYTES_11
126.9
MONOCYTES_12
125.9
MONOCYTES_13
125.1
MONOCYTES_14
124.7
MONOCYTES_15
124.4
MONOCYTES_16
124.4
MONOCYTES_17
124.1
MONOCYTES_18
123.7
MONOCYTES_19
123.6
MONOCYTES_20
123.2
MONOCYTES_21
122.9
MONOCYTES_22
122.6
MONOCYTES_23
122.0
MONOCYTES_24
121.7
MONOCYTES_25
120.8
MONOCYTES_26
120.6
MONOCYTES_27
120.0
MONOCYTES_28
119.6
MONOCYTES_29
119.5
MONOCYTES_30
119.5
MONOCYTES_31
119.2
MONOCYTES_32
118.8
MONOCYTES_33
118.0
MONOCYTES_34
117.9
MONOCYTES_35
117.7
MONOCYTES_36
117.6
MONOCYTES_37
117.4
MONOCYTES_38
117.2
MONOCYTES_39
117.0
MONOCYTES_40
117.0
MONOCYTES_41
117.0
MONOCYTES_42
116.2
MONOCYTES_43
116.1
MONOCYTES_44
115.7
MONOCYTES_45
115.7
MONOCYTES_46
115.3
MONOCYTES_47
115.3
MONOCYTES_48
114.8
MONOCYTES_49
114.8
MONOCYTES_50
114.1
MONOCYTES_51
113.8
MONOCYTES_52
113.7
MONOCYTES_53
113.6
MONOCYTES_54
113.1
MONOCYTES_55
112.9
MONOCYTES_56
112.9
MONOCYTES_57
112.6
MONOCYTES_58
112.5
MONOCYTES_59
111.5
MONOCYTES_60
111.2
MONOCYTES_61
110.5
MONOCYTES_62
110.0
MONOCYTES_63
109.7
MONOCYTES_64
109.2
MONOCYTES_65
109.1
MONOCYTES_66
109.0
MONOCYTES_67
109.0
MONOCYTES_68
108.9
MONOCYTES_69
108.8
MONOCYTES_70
108.6
MONOCYTES_71
108.4
MONOCYTES_72
108.3
MONOCYTES_73
108.3
MONOCYTES_74
107.9
MONOCYTES_75
107.8
MONOCYTES_76
106.7
MONOCYTES_77
106.6
MONOCYTES_78
106.1
MONOCYTES_79
105.5
MONOCYTES_80
105.1
MONOCYTES_81
104.5
MONOCYTES_82
103.0
MONOCYTES_83
102.9
MONOCYTES_84
102.0
MONOCYTES_85
101.7
MONOCYTES_86
98.1
MONOCYTES_87
97.7
MONOCYTES_88
95.0
MONOCYTES_89
94.7
MONOCYTES_90
94.2
MONOCYTES_91
90.9
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Non-classical monocyte TPM: 122.7
Samples: 90
Max TPM: 160.4
Min TPM: 98.7
M2_1
160.4
M2_2
148.0
M2_3
145.1
M2_4
144.2
M2_5
144.1
M2_6
140.2
M2_7
139.2
M2_8
138.5
M2_9
137.7
M2_10
137.7
M2_11
137.0
M2_12
136.0
M2_13
134.6
M2_14
134.2
M2_15
133.4
M2_16
133.0
M2_17
132.8
M2_18
132.6
M2_19
132.4
M2_20
131.9
M2_21
131.6
M2_22
130.3
M2_23
129.9
M2_24
129.5
M2_25
129.4
M2_26
128.9
M2_27
128.4
M2_28
128.3
M2_29
128.3
M2_30
128.1
M2_31
128.0
M2_32
127.7
M2_33
126.6
M2_34
126.6
M2_35
126.3
M2_36
126.2
M2_37
125.8
M2_38
125.4
M2_39
125.3
M2_40
125.1
M2_41
124.8
M2_42
124.8
M2_43
124.6
M2_44
124.4
M2_45
124.1
M2_46
123.6
M2_47
123.5
M2_48
123.4
M2_49
122.9
M2_50
122.7
M2_51
122.4
M2_52
121.4
M2_53
121.2
M2_54
121.1
M2_55
120.0
M2_56
119.2
M2_57
117.8
M2_58
117.4
M2_59
117.2
M2_60
116.1
M2_61
116.0
M2_62
115.4
M2_63
115.3
M2_64
115.1
M2_65
114.7
M2_66
114.5
M2_67
114.4
M2_68
114.0
M2_69
113.3
M2_70
113.0
M2_71
112.9
M2_72
112.1
M2_73
111.6
M2_74
110.9
M2_75
109.8
M2_76
108.4
M2_77
108.2
M2_78
107.1
M2_79
107.0
M2_80
106.9
M2_81
106.4
M2_82
106.3
M2_83
106.1
M2_84
105.7
M2_85
105.4
M2_86
103.6
M2_87
102.9
M2_88
101.8
M2_89
100.1
M2_90
98.7
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