A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
112.1
nTPM
Monaco:
943.0
nTPM
Schmiedel:
95.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.1
HPA sample
nTPM
Memory B-cell nTPM: 112.1
Samples: 6
Max nTPM: 122.8
Min nTPM: 95.2
P10809_1017
122.8
P10809_1025
110.5
P10809_1044
112.3
P10809_1063
95.2
P10809_1092
122.1
P10809_1105
110.0
Naive B-cell nTPM: 102.9
Samples: 6
Max nTPM: 207.1
Min nTPM: 63.2
P10809_1011
63.2
P10809_1029
85.8
P10809_1048
207.1
P10809_1067
74.6
P10809_1091
96.6
P10809_1104
90.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
943.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 244.9
Samples: 4
Max nTPM: 269.6
Min nTPM: 199.1
RHH5310_R3677
269.6
RHH5218_R3590
199.1
RHH5247_R3619
261.7
RHH5276_R3648
249.0
Naive B-cell nTPM: 165.8
Samples: 4
Max nTPM: 244.2
Min nTPM: 124.4
RHH5308_R3675
124.4
RHH5216_R3588
244.2
RHH5245_R3617
134.7
RHH5274_R3646
159.9
Non-switched memory B-cell nTPM: 196.0
Samples: 4
Max nTPM: 234.6
Min nTPM: 171.0
RHH5309_R3676
171.0
RHH5217_R3589
192.9
RHH5246_R3618
234.6
RHH5275_R3647
185.3
Plasmablast nTPM: 943.0
Samples: 4
Max nTPM: 1032.0
Min nTPM: 898.4
RHH5312_R3679
941.7
RHH5220_R3592
1032.0
RHH5249_R3621
898.4
RHH5278_R3650
899.8
Switched memory B-cell nTPM: 201.4
Samples: 4
Max nTPM: 240.5
Min nTPM: 168.5
RHH5311_R3678
168.5
RHH5219_R3591
240.5
RHH5248_R3620
216.8
RHH5277_R3649
179.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.5
Schmiedel sample id
TPM
Naive B-cell TPM: 95.5
Samples: 91
Max TPM: 143.3
Min TPM: 66.1
B_CELL_NAIVE_1
143.3
B_CELL_NAIVE_2
133.6
B_CELL_NAIVE_3
132.8
B_CELL_NAIVE_4
132.4
B_CELL_NAIVE_5
130.5
B_CELL_NAIVE_6
126.4
B_CELL_NAIVE_7
124.9
B_CELL_NAIVE_8
123.6
B_CELL_NAIVE_9
122.7
B_CELL_NAIVE_10
121.8
B_CELL_NAIVE_11
120.6
B_CELL_NAIVE_12
118.2
B_CELL_NAIVE_13
114.2
B_CELL_NAIVE_14
111.2
B_CELL_NAIVE_15
110.1
B_CELL_NAIVE_16
109.6
B_CELL_NAIVE_17
109.2
B_CELL_NAIVE_18
108.3
B_CELL_NAIVE_19
106.5
B_CELL_NAIVE_20
105.4
B_CELL_NAIVE_21
102.3
B_CELL_NAIVE_22
101.9
B_CELL_NAIVE_23
101.9
B_CELL_NAIVE_24
101.8
B_CELL_NAIVE_25
101.0
B_CELL_NAIVE_26
100.7
B_CELL_NAIVE_27
100.4
B_CELL_NAIVE_28
100.2
B_CELL_NAIVE_29
99.8
B_CELL_NAIVE_30
99.2
B_CELL_NAIVE_31
98.7
B_CELL_NAIVE_32
98.4
B_CELL_NAIVE_33
98.3
B_CELL_NAIVE_34
98.2
B_CELL_NAIVE_35
97.9
B_CELL_NAIVE_36
97.0
B_CELL_NAIVE_37
96.8
B_CELL_NAIVE_38
96.6
B_CELL_NAIVE_39
96.1
B_CELL_NAIVE_40
96.0
B_CELL_NAIVE_41
95.9
B_CELL_NAIVE_42
95.6
B_CELL_NAIVE_43
95.3
B_CELL_NAIVE_44
95.2
B_CELL_NAIVE_45
95.0
B_CELL_NAIVE_46
94.1
B_CELL_NAIVE_47
93.7
B_CELL_NAIVE_48
93.6
B_CELL_NAIVE_49
92.9
B_CELL_NAIVE_50
92.3
B_CELL_NAIVE_51
91.9
B_CELL_NAIVE_52
91.1
B_CELL_NAIVE_53
91.1
B_CELL_NAIVE_54
91.0
B_CELL_NAIVE_55
90.6
B_CELL_NAIVE_56
90.0
B_CELL_NAIVE_57
89.1
B_CELL_NAIVE_58
89.0
B_CELL_NAIVE_59
87.6
B_CELL_NAIVE_60
86.8
B_CELL_NAIVE_61
86.6
B_CELL_NAIVE_62
86.5
B_CELL_NAIVE_63
85.6
B_CELL_NAIVE_64
84.3
B_CELL_NAIVE_65
84.3
B_CELL_NAIVE_66
84.1
B_CELL_NAIVE_67
84.1
B_CELL_NAIVE_68
83.2
B_CELL_NAIVE_69
83.0
B_CELL_NAIVE_70
82.5
B_CELL_NAIVE_71
82.4
B_CELL_NAIVE_72
82.4
B_CELL_NAIVE_73
82.2
B_CELL_NAIVE_74
82.2
B_CELL_NAIVE_75
81.8
B_CELL_NAIVE_76
80.7
B_CELL_NAIVE_77
80.3
B_CELL_NAIVE_78
80.2
B_CELL_NAIVE_79
79.3
B_CELL_NAIVE_80
78.7
B_CELL_NAIVE_81
76.5
B_CELL_NAIVE_82
76.5
B_CELL_NAIVE_83
76.2
B_CELL_NAIVE_84
75.8
B_CELL_NAIVE_85
75.5
B_CELL_NAIVE_86
75.0
B_CELL_NAIVE_87
74.7
B_CELL_NAIVE_88
72.9
B_CELL_NAIVE_89
71.9
B_CELL_NAIVE_90
66.1
B_CELL_NAIVE_91
66.1
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