A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
147.4
nTPM
Monaco:
287.6
nTPM
Schmiedel:
158.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
147.4
HPA sample
nTPM
Classical monocyte nTPM: 143.2
Samples: 6
Max nTPM: 184.6
Min nTPM: 110.8
P10809_1003
159.2
P10809_1020
184.6
P10809_1039
152.7
P10809_1058
110.8
P10809_1080
133.0
P10809_1107
118.8
Intermediate monocyte nTPM: 147.4
Samples: 6
Max nTPM: 167.7
Min nTPM: 135.5
P10809_1004
139.7
P10809_1023
167.7
P10809_1042
156.4
P10809_1061
135.5
P10809_1081
136.7
P10809_1108
148.3
Non-classical monocyte nTPM: 141.7
Samples: 5
Max nTPM: 159.5
Min nTPM: 118.0
P10809_1005
147.2
P10809_1053
159.5
P10809_1072
118.0
P10809_1082
129.6
P10809_1109
154.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
287.6
Monaco sample
nTPM
Classical monocyte nTPM: 287.6
Samples: 4
Max nTPM: 327.6
Min nTPM: 260.4
RHH5313_R3680
278.6
RHH5221_R3593
327.6
RHH5250_R3622
283.8
RHH5279_R3651
260.4
Intermediate monocyte nTPM: 264.4
Samples: 4
Max nTPM: 309.0
Min nTPM: 217.7
RHH5314_R3681
217.7
RHH5222_R3594
309.0
RHH5251_R3623
258.3
RHH5280_R3652
272.5
Non-classical monocyte nTPM: 260.4
Samples: 4
Max nTPM: 287.0
Min nTPM: 235.3
RHH5315_R3682
257.5
RHH5223_R3595
287.0
RHH5252_R3624
261.8
RHH5281_R3653
235.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
158.7
Schmiedel sample id
TPM
Classical monocyte TPM: 139.5
Samples: 91
Max TPM: 182.5
Min TPM: 96.8
MONOCYTES_1
182.5
MONOCYTES_2
179.8
MONOCYTES_3
178.4
MONOCYTES_4
173.2
MONOCYTES_5
173.1
MONOCYTES_6
173.0
MONOCYTES_7
172.0
MONOCYTES_8
165.6
MONOCYTES_9
164.1
MONOCYTES_10
163.1
MONOCYTES_11
160.3
MONOCYTES_12
160.2
MONOCYTES_13
159.2
MONOCYTES_14
159.0
MONOCYTES_15
158.0
MONOCYTES_16
157.4
MONOCYTES_17
157.1
MONOCYTES_18
156.6
MONOCYTES_19
156.0
MONOCYTES_20
155.8
MONOCYTES_21
155.6
MONOCYTES_22
153.6
MONOCYTES_23
153.3
MONOCYTES_24
153.0
MONOCYTES_25
152.3
MONOCYTES_26
152.1
MONOCYTES_27
150.7
MONOCYTES_28
149.5
MONOCYTES_29
149.0
MONOCYTES_30
148.9
MONOCYTES_31
148.9
MONOCYTES_32
148.6
MONOCYTES_33
148.2
MONOCYTES_34
146.7
MONOCYTES_35
146.5
MONOCYTES_36
145.6
MONOCYTES_37
142.5
MONOCYTES_38
142.2
MONOCYTES_39
141.1
MONOCYTES_40
140.3
MONOCYTES_41
139.3
MONOCYTES_42
139.1
MONOCYTES_43
138.9
MONOCYTES_44
138.5
MONOCYTES_45
137.7
MONOCYTES_46
136.3
MONOCYTES_47
135.8
MONOCYTES_48
134.2
MONOCYTES_49
134.2
MONOCYTES_50
132.9
MONOCYTES_51
132.8
MONOCYTES_52
132.7
MONOCYTES_53
131.8
MONOCYTES_54
131.4
MONOCYTES_55
131.4
MONOCYTES_56
130.8
MONOCYTES_57
130.8
MONOCYTES_58
130.3
MONOCYTES_59
130.2
MONOCYTES_60
130.1
MONOCYTES_61
130.0
MONOCYTES_62
129.7
MONOCYTES_63
128.8
MONOCYTES_64
128.2
MONOCYTES_65
127.5
MONOCYTES_66
127.5
MONOCYTES_67
127.3
MONOCYTES_68
126.9
MONOCYTES_69
126.6
MONOCYTES_70
125.8
MONOCYTES_71
125.5
MONOCYTES_72
125.1
MONOCYTES_73
125.0
MONOCYTES_74
124.8
MONOCYTES_75
124.7
MONOCYTES_76
124.3
MONOCYTES_77
124.1
MONOCYTES_78
122.2
MONOCYTES_79
122.2
MONOCYTES_80
121.5
MONOCYTES_81
118.8
MONOCYTES_82
118.2
MONOCYTES_83
118.1
MONOCYTES_84
117.5
MONOCYTES_85
114.6
MONOCYTES_86
113.8
MONOCYTES_87
113.7
MONOCYTES_88
105.8
MONOCYTES_89
104.0
MONOCYTES_90
103.1
MONOCYTES_91
96.8
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Non-classical monocyte TPM: 158.7
Samples: 90
Max TPM: 233.7
Min TPM: 98.1
M2_1
233.7
M2_2
220.7
M2_3
218.1
M2_4
213.6
M2_5
210.6
M2_6
199.1
M2_7
198.9
M2_8
191.8
M2_9
191.3
M2_10
190.1
M2_11
190.1
M2_12
189.1
M2_13
185.9
M2_14
183.8
M2_15
183.3
M2_16
181.5
M2_17
181.5
M2_18
176.6
M2_19
175.4
M2_20
173.7
M2_21
173.7
M2_22
173.4
M2_23
172.4
M2_24
171.5
M2_25
169.5
M2_26
167.3
M2_27
167.2
M2_28
166.1
M2_29
165.9
M2_30
165.1
M2_31
164.3
M2_32
164.3
M2_33
163.2
M2_34
162.9
M2_35
162.7
M2_36
162.4
M2_37
162.4
M2_38
162.2
M2_39
161.4
M2_40
161.2
M2_41
160.3
M2_42
157.8
M2_43
157.2
M2_44
157.1
M2_45
156.2
M2_46
154.1
M2_47
153.9
M2_48
153.8
M2_49
153.2
M2_50
152.4
M2_51
152.2
M2_52
152.2
M2_53
152.1
M2_54
151.3
M2_55
151.2
M2_56
150.8
M2_57
150.7
M2_58
150.4
M2_59
150.1
M2_60
148.7
M2_61
147.0
M2_62
146.7
M2_63
146.0
M2_64
145.8
M2_65
145.4
M2_66
142.5
M2_67
141.6
M2_68
140.6
M2_69
139.2
M2_70
138.9
M2_71
138.9
M2_72
138.8
M2_73
138.7
M2_74
138.4
M2_75
138.3
M2_76
137.9
M2_77
134.1
M2_78
133.1
M2_79
131.5
M2_80
131.1
M2_81
129.1
M2_82
128.5
M2_83
126.6
M2_84
125.7
M2_85
123.7
M2_86
122.7
M2_87
120.9
M2_88
120.7
M2_89
119.3
M2_90
98.1
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