FTL
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • FTL
EVOLUTIONARY MEDULLA OBLONGATA Show tissue menu
BRAIN43 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION
HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:3348.3 nTPM
FANTOM5:1699.6 Scaled Tags Per Million
Mouse:192.8 nTPM
Rat:395.2 nTPM
Pig:2235.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3348.3
Sample id Sample description nTPM
Area postrema
nTPM: 3348.3
2799 Male, age 61, both hemispheres 5138.0
2306 Male, age 80, both hemispheres 3029.0
2054 Male, age 76, both hemispheres 1878.0
Dorsal medullary reticular nucleus
nTPM: 1833.2
2088 Male, age 76, both hemispheres 2081.4
2373 Male, age 61, both hemispheres 1758.4
2040 Female, age 85, both hemispheres 1659.8
Dorsal motor vagal complex
nTPM: 2225.6
2807 Female, age 85, both hemispheres 2841.5
2643 Male, age 74, both hemispheres 2817.6
2797 Male, age 61, both hemispheres 2395.4
2185 Male, age 76, both hemispheres 2300.4
2813 Female, age 72, unknown 1957.7
2000 Male, age 74, unknown 1895.7
2844 Male, age 55, unknown 1873.1
2133 Female, age 91, both hemispheres 1723.4
Gigantocellular reticular nuclei, medullary
nTPM: 1817.7
2314 Male, age 61, both hemispheres 2082.0
2310 Male, age 80, both hemispheres 1987.9
2387 Female, age 91, both hemispheres 1840.8
2022 Male, age 76, right hemisphere 1738.1
1876 Female, age 85, both hemispheres 1645.4
2462 Male, age 74, both hemispheres 1611.8
Gigantocellular reticular nuclei, pars
nTPM: 1700.8
2336 Male, age 61, both hemispheres 1813.0
2084 Female, age 85, both hemispheres 1807.9
2706 Male, age 80, both hemispheres 1802.9
2330 Male, age 80, both hemispheres 1772.5
2168 Male, age 76, both hemispheres 1307.7
Inferior olive
nTPM: 2486.0
2379 Male, age 80, both hemispheres 2767.5
2628 Female, age 91, both hemispheres 2603.2
2085 Female, age 85, both hemispheres 2390.8
2178 Male, age 61, both hemispheres 2354.2
2563 Male, age 74, both hemispheres 2314.5
Lateral medullary reticular nucleus
nTPM: 2488.3
2852 Male, age 80, both hemispheres 3275.1
2305 Male, age 74, both hemispheres 2580.9
2190 Female, age 85, both hemispheres 2523.3
2804 Female, age 91, both hemispheres 2469.7
2374 Male, age 61, both hemispheres 2159.7
2044 Male, age 76, both hemispheres 1920.9
Medial olivary nucleus
nTPM: 3113.7
1962 Male, age 76, both hemispheres 3766.1
1943 Male, age 61, both hemispheres 3172.4
2851 Male, age 80, both hemispheres 3001.4
2138 Female, age 91, both hemispheres 2515.1
Medial vestibular nucleus
nTPM: 1994.6
2624 Male, age 61, both hemispheres 2764.7
2801 Male, age 74, both hemispheres 2139.5
2093 Male, age 80, both hemispheres 1921.7
2803 Female, age 91, both hemispheres 1881.0
2743 Female, age 85, both hemispheres 1660.0
2134 Male, age 76, both hemispheres 1600.6
Motor hypoglossal nucleus
nTPM: 2044.8
2182 Male, age 80, both hemispheres 2903.4
2132 Female, age 85, both hemispheres 2173.8
2125 Female, age 91, both hemispheres 1945.1
2277 Male, age 76, both hemispheres 1726.1
2461 Male, age 61, both hemispheres 1475.6
Nucleus ambiguus
nTPM: 2593.7
2071 Male, age 76, both hemispheres 3123.8
2096 Female, age 85, both hemispheres 2063.7
Nucleus cuneatus
nTPM: 2440.1
2808 Female, age 85, both hemispheres 3545.5
2380 Male, age 80, both hemispheres 3095.6
2805 Female, age 91, both hemispheres 2598.6
2564 Male, age 74, both hemispheres 2483.8
2381 Male, age 80, both hemispheres 2470.7
2100 Male, age 76, both hemispheres 2113.8
2376 Male, age 61, both hemispheres 1927.2
2131 Male, age 76, both hemispheres 1904.9
2562 Male, age 61, both hemispheres 1821.0
Nucleus gracilis
nTPM: 3131.3
2299 Female, age 85, both hemispheres 3738.2
2382 Male, age 80, both hemispheres 2968.0
2627 Male, age 74, both hemispheres 2687.8
Nucleus raphe obscurus
nTPM: 2787.7
2142 Male, age 76, midline 3619.8
2845 Female, age 85, midline 2733.8
2800 Male, age 61, midline 2009.6
Nucleus raphe pallidus
nTPM: 3317.6
1924 Male, age 61, midline 3809.3
2145 Male, age 76, midline 3514.4
2183 Male, age 80, midline 2629.1
Nucleus tractus solitarii
nTPM: 1722.3
2191 Female, age 85, both hemispheres 2270.8
2307 Male, age 80, both hemispheres 1899.6
2656 Male, age 76, both hemispheres 1449.1
2144 Female, age 91, right hemisphere 1269.8
Parvicellular reticular nuclei
nTPM: 2124.2
2095 Male, age 76, both hemispheres 2403.8
2119 Male, age 80, both hemispheres 2393.6
2558 Male, age 74, both hemispheres 1575.1
Parvicellular reticular nuclei, medullary
nTPM: 1732.4
2091 Female, age 85, both hemispheres 1812.8
2181 Male, age 80, left hemisphere 1702.5
2189 Female, age 91, both hemispheres 1682.0
Peritrigeminal nucleus
nTPM: 2819.8
2067 Female, age 85, both hemispheres 3490.3
2136 Male, age 76, both hemispheres 2835.6
2179 Male, age 61, both hemispheres 2133.3
Prepositus hypoglossal nucleus
nTPM: 2114.8
2855 Female, age 85, right hemisphere 2155.1
2086 Male, age 80, both hemispheres 2074.5
Spinal trigeminal nucleus, caudal
nTPM: 2052.5
2308 Male, age 80, both hemispheres 2436.7
2642 Male, age 74, both hemispheres 2233.6
2447 Male, age 76, both hemispheres 1981.4
2312 Male, age 61, both hemispheres 1930.4
2390 Female, age 91, both hemispheres 1680.3
Spinal trigeminal nucleus, interpolar
nTPM: 1925.3
2625 Male, age 61, both hemispheres 2152.2
2033 Male, age 80, both hemispheres 2104.4
2386 Female, age 85, both hemispheres 1963.9
2066 Male, age 76, right hemisphere 1769.4
2389 Female, age 91, both hemispheres 1636.6
Spinal vestibular nucleus
nTPM: 2197.0
2796 Male, age 61, both hemispheres 2742.1
2384 Male, age 74, both hemispheres 2563.6
2806 Female, age 85, both hemispheres 2135.2
2780 Male, age 80, both hemispheres 2086.3
2748 Male, age 76, both hemispheres 2049.1
2186 Female, age 91, both hemispheres 1606.1
Superior vestibular nucleus
nTPM: 2144.2
2015 Male, age 80, both hemispheres 2280.3
2061 Male, age 76, both hemispheres 2127.4
2383 Male, age 74, both hemispheres 2024.7
Ventral medullary reticular nucleus
nTPM: 1976.2
2060 Male, age 76, both hemispheres 1999.8
2372 Male, age 61, both hemispheres 1952.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 2411.4
2118 Male, age 80, both hemispheres 2838.9
1986 Male, age 76, both hemispheres 2506.4
2302 Female, age 91, both hemispheres 2500.0
2741 Female, age 85, both hemispheres 2141.7
2180 Male, age 61, both hemispheres 2070.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1699.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 1699.6
FF:10038-101F2 18-64 years, mixed 2409.1
FF:10155-103A2 76 years, female 1362.6
FF:10174-103C3 60 years, female 1326.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2235.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 2235.2
Samples: 4

Max nTPM: 3043.4
Min nTPM: 1566.1
Sample A Female 1887.0
Sample B Female 1566.1
Sample C Male 2444.4
Sample D Male 3043.4

MEDULLA OBLONGATA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.8
Mouse sample Sample description nTPM
Medulla oblongata
nTPM: 192.8
Samples: 4

Max nTPM: 216.4
Min nTPM: 158.7
Sample A 197.1
Sample B 158.7
Sample C 216.4
Sample D 199.0

MEDULLA OBLONGATA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

395.2
Rat sample Sample description nTPM
Medulla oblongata
nTPM: 395.2
Samples: 4

Max nTPM: 422.4
Min nTPM: 358.4
Sample A 422.4
Sample A 395.1
Sample A 404.9
Sample A 358.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.