A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.5
nTPM
Monaco:
90.9
nTPM
Schmiedel:
80.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.5
HPA sample
nTPM
Memory B-cell nTPM: 12.2
Samples: 6
Max nTPM: 17.0
Min nTPM: 2.0
P10809_1017
17.0
P10809_1025
12.7
P10809_1044
2.0
P10809_1063
16.1
P10809_1092
14.4
P10809_1105
11.2
Naive B-cell nTPM: 15.5
Samples: 6
Max nTPM: 18.6
Min nTPM: 13.3
P10809_1011
15.0
P10809_1029
13.8
P10809_1048
13.3
P10809_1067
14.7
P10809_1091
17.8
P10809_1104
18.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 85.3
Samples: 4
Max nTPM: 99.2
Min nTPM: 64.1
RHH5310_R3677
64.1
RHH5218_R3590
80.2
RHH5247_R3619
99.2
RHH5276_R3648
97.6
Naive B-cell nTPM: 73.2
Samples: 4
Max nTPM: 113.2
Min nTPM: 40.5
RHH5308_R3675
40.5
RHH5216_R3588
113.2
RHH5245_R3617
80.9
RHH5274_R3646
58.0
Non-switched memory B-cell nTPM: 76.8
Samples: 4
Max nTPM: 93.8
Min nTPM: 61.9
RHH5309_R3676
83.9
RHH5217_R3589
93.8
RHH5246_R3618
67.5
RHH5275_R3647
61.9
Plasmablast nTPM: 91.0
Samples: 4
Max nTPM: 121.0
Min nTPM: 75.1
RHH5312_R3679
83.3
RHH5220_R3592
121.0
RHH5249_R3621
75.1
RHH5278_R3650
84.5
Switched memory B-cell nTPM: 79.0
Samples: 4
Max nTPM: 89.9
Min nTPM: 61.6
RHH5311_R3678
78.2
RHH5219_R3591
86.2
RHH5248_R3620
89.9
RHH5277_R3649
61.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.0
Schmiedel sample id
TPM
Naive B-cell TPM: 80.0
Samples: 91
Max TPM: 113.7
Min TPM: 26.7
B_CELL_NAIVE_1
113.7
B_CELL_NAIVE_2
112.5
B_CELL_NAIVE_3
111.6
B_CELL_NAIVE_4
111.4
B_CELL_NAIVE_5
110.8
B_CELL_NAIVE_6
110.5
B_CELL_NAIVE_7
108.3
B_CELL_NAIVE_8
107.4
B_CELL_NAIVE_9
106.6
B_CELL_NAIVE_10
106.4
B_CELL_NAIVE_11
106.4
B_CELL_NAIVE_12
105.3
B_CELL_NAIVE_13
105.1
B_CELL_NAIVE_14
104.8
B_CELL_NAIVE_15
103.9
B_CELL_NAIVE_16
103.9
B_CELL_NAIVE_17
103.6
B_CELL_NAIVE_18
101.8
B_CELL_NAIVE_19
101.6
B_CELL_NAIVE_20
100.4
B_CELL_NAIVE_21
100.1
B_CELL_NAIVE_22
99.6
B_CELL_NAIVE_23
97.9
B_CELL_NAIVE_24
96.4
B_CELL_NAIVE_25
94.8
B_CELL_NAIVE_26
94.4
B_CELL_NAIVE_27
92.7
B_CELL_NAIVE_28
91.3
B_CELL_NAIVE_29
90.9
B_CELL_NAIVE_30
90.6
B_CELL_NAIVE_31
90.6
B_CELL_NAIVE_32
90.4
B_CELL_NAIVE_33
90.2
B_CELL_NAIVE_34
90.2
B_CELL_NAIVE_35
90.1
B_CELL_NAIVE_36
89.7
B_CELL_NAIVE_37
88.9
B_CELL_NAIVE_38
88.2
B_CELL_NAIVE_39
87.7
B_CELL_NAIVE_40
86.5
B_CELL_NAIVE_41
86.2
B_CELL_NAIVE_42
86.2
B_CELL_NAIVE_43
85.2
B_CELL_NAIVE_44
84.2
B_CELL_NAIVE_45
83.8
B_CELL_NAIVE_46
82.6
B_CELL_NAIVE_47
82.3
B_CELL_NAIVE_48
81.1
B_CELL_NAIVE_49
80.0
B_CELL_NAIVE_50
79.3
B_CELL_NAIVE_51
78.9
B_CELL_NAIVE_52
78.6
B_CELL_NAIVE_53
76.8
B_CELL_NAIVE_54
76.4
B_CELL_NAIVE_55
76.2
B_CELL_NAIVE_56
75.5
B_CELL_NAIVE_57
75.0
B_CELL_NAIVE_58
74.8
B_CELL_NAIVE_59
74.2
B_CELL_NAIVE_60
73.9
B_CELL_NAIVE_61
73.1
B_CELL_NAIVE_62
73.0
B_CELL_NAIVE_63
72.2
B_CELL_NAIVE_64
72.0
B_CELL_NAIVE_65
71.2
B_CELL_NAIVE_66
70.7
B_CELL_NAIVE_67
70.1
B_CELL_NAIVE_68
70.1
B_CELL_NAIVE_69
70.0
B_CELL_NAIVE_70
68.8
B_CELL_NAIVE_71
67.8
B_CELL_NAIVE_72
67.6
B_CELL_NAIVE_73
65.3
B_CELL_NAIVE_74
60.4
B_CELL_NAIVE_75
59.5
B_CELL_NAIVE_76
59.3
B_CELL_NAIVE_77
57.4
B_CELL_NAIVE_78
51.5
B_CELL_NAIVE_79
50.0
B_CELL_NAIVE_80
48.6
B_CELL_NAIVE_81
48.0
B_CELL_NAIVE_82
47.8
B_CELL_NAIVE_83
46.6
B_CELL_NAIVE_84
45.4
B_CELL_NAIVE_85
43.7
B_CELL_NAIVE_86
35.7
B_CELL_NAIVE_87
34.4
B_CELL_NAIVE_88
33.3
B_CELL_NAIVE_89
27.8
B_CELL_NAIVE_90
27.2
B_CELL_NAIVE_91
26.7
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The Human Protein Atlas project is funded
