A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.0
nTPM
Monaco:
71.2
nTPM
Schmiedel:
75.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.0
HPA sample
nTPM
Classical monocyte nTPM: 14.6
Samples: 6
Max nTPM: 19.7
Min nTPM: 10.1
P10809_1003
19.7
P10809_1020
15.7
P10809_1039
10.1
P10809_1058
13.7
P10809_1080
11.5
P10809_1107
16.8
Intermediate monocyte nTPM: 23.0
Samples: 6
Max nTPM: 45.0
Min nTPM: 12.3
P10809_1004
23.5
P10809_1023
12.3
P10809_1042
27.2
P10809_1061
45.0
P10809_1081
12.3
P10809_1108
17.8
Non-classical monocyte nTPM: 18.2
Samples: 5
Max nTPM: 28.6
Min nTPM: 8.9
P10809_1005
14.7
P10809_1053
19.6
P10809_1072
28.6
P10809_1082
8.9
P10809_1109
19.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.2
Monaco sample
nTPM
Classical monocyte nTPM: 71.2
Samples: 4
Max nTPM: 96.7
Min nTPM: 53.0
RHH5313_R3680
65.6
RHH5221_R3593
96.7
RHH5250_R3622
69.6
RHH5279_R3651
53.0
Intermediate monocyte nTPM: 68.4
Samples: 4
Max nTPM: 87.2
Min nTPM: 58.0
RHH5314_R3681
59.4
RHH5222_R3594
87.2
RHH5251_R3623
58.0
RHH5280_R3652
68.8
Non-classical monocyte nTPM: 64.9
Samples: 4
Max nTPM: 81.6
Min nTPM: 54.6
RHH5315_R3682
65.0
RHH5223_R3595
81.6
RHH5252_R3624
58.4
RHH5281_R3653
54.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.8
Schmiedel sample id
TPM
Classical monocyte TPM: 70.0
Samples: 91
Max TPM: 104.3
Min TPM: 40.7
MONOCYTES_1
104.3
MONOCYTES_2
96.8
MONOCYTES_3
89.4
MONOCYTES_4
89.3
MONOCYTES_5
89.2
MONOCYTES_6
88.5
MONOCYTES_7
88.0
MONOCYTES_8
87.7
MONOCYTES_9
87.5
MONOCYTES_10
87.3
MONOCYTES_11
87.1
MONOCYTES_12
86.2
MONOCYTES_13
85.9
MONOCYTES_14
85.0
MONOCYTES_15
84.1
MONOCYTES_16
83.8
MONOCYTES_17
83.5
MONOCYTES_18
83.4
MONOCYTES_19
83.1
MONOCYTES_20
83.0
MONOCYTES_21
82.4
MONOCYTES_22
80.9
MONOCYTES_23
80.3
MONOCYTES_24
79.0
MONOCYTES_25
79.0
MONOCYTES_26
78.8
MONOCYTES_27
78.7
MONOCYTES_28
78.7
MONOCYTES_29
78.6
MONOCYTES_30
78.5
MONOCYTES_31
77.9
MONOCYTES_32
77.3
MONOCYTES_33
77.1
MONOCYTES_34
76.9
MONOCYTES_35
76.7
MONOCYTES_36
76.3
MONOCYTES_37
76.0
MONOCYTES_38
75.7
MONOCYTES_39
75.5
MONOCYTES_40
74.9
MONOCYTES_41
74.0
MONOCYTES_42
73.7
MONOCYTES_43
73.7
MONOCYTES_44
73.2
MONOCYTES_45
73.0
MONOCYTES_46
71.6
MONOCYTES_47
71.6
MONOCYTES_48
71.0
MONOCYTES_49
70.3
MONOCYTES_50
69.9
MONOCYTES_51
69.6
MONOCYTES_52
68.9
MONOCYTES_53
68.6
MONOCYTES_54
68.4
MONOCYTES_55
67.8
MONOCYTES_56
65.9
MONOCYTES_57
65.9
MONOCYTES_58
65.5
MONOCYTES_59
65.2
MONOCYTES_60
64.5
MONOCYTES_61
64.2
MONOCYTES_62
64.1
MONOCYTES_63
62.1
MONOCYTES_64
61.9
MONOCYTES_65
61.3
MONOCYTES_66
60.9
MONOCYTES_67
60.8
MONOCYTES_68
58.6
MONOCYTES_69
58.4
MONOCYTES_70
58.4
MONOCYTES_71
58.3
MONOCYTES_72
57.5
MONOCYTES_73
57.1
MONOCYTES_74
57.1
MONOCYTES_75
56.8
MONOCYTES_76
56.4
MONOCYTES_77
53.7
MONOCYTES_78
52.4
MONOCYTES_79
52.0
MONOCYTES_80
51.2
MONOCYTES_81
49.9
MONOCYTES_82
49.9
MONOCYTES_83
48.5
MONOCYTES_84
48.3
MONOCYTES_85
46.9
MONOCYTES_86
45.5
MONOCYTES_87
43.2
MONOCYTES_88
43.0
MONOCYTES_89
42.1
MONOCYTES_90
41.4
MONOCYTES_91
40.7
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Non-classical monocyte TPM: 75.8
Samples: 90
Max TPM: 114.5
Min TPM: 29.6
M2_1
114.5
M2_2
105.8
M2_3
103.7
M2_4
102.1
M2_5
101.6
M2_6
101.1
M2_7
99.4
M2_8
99.4
M2_9
99.3
M2_10
98.8
M2_11
98.4
M2_12
97.7
M2_13
95.9
M2_14
95.5
M2_15
95.4
M2_16
94.2
M2_17
94.0
M2_18
93.7
M2_19
93.2
M2_20
92.8
M2_21
92.5
M2_22
92.2
M2_23
91.8
M2_24
90.9
M2_25
90.8
M2_26
90.8
M2_27
89.2
M2_28
89.0
M2_29
88.8
M2_30
88.4
M2_31
87.9
M2_32
87.4
M2_33
86.9
M2_34
86.8
M2_35
86.1
M2_36
85.9
M2_37
84.9
M2_38
84.8
M2_39
83.3
M2_40
82.4
M2_41
81.1
M2_42
80.5
M2_43
80.1
M2_44
79.7
M2_45
79.7
M2_46
79.6
M2_47
78.9
M2_48
78.6
M2_49
76.6
M2_50
74.9
M2_51
74.3
M2_52
74.0
M2_53
73.7
M2_54
73.5
M2_55
72.5
M2_56
71.9
M2_57
71.5
M2_58
70.6
M2_59
69.2
M2_60
68.9
M2_61
67.0
M2_62
66.9
M2_63
66.0
M2_64
65.7
M2_65
65.1
M2_66
64.7
M2_67
63.9
M2_68
62.3
M2_69
60.0
M2_70
59.1
M2_71
59.0
M2_72
58.2
M2_73
57.1
M2_74
55.3
M2_75
52.8
M2_76
52.3
M2_77
48.3
M2_78
47.5
M2_79
47.2
M2_80
46.9
M2_81
46.4
M2_82
46.0
M2_83
45.8
M2_84
45.6
M2_85
44.6
M2_86
42.3
M2_87
41.3
M2_88
36.1
M2_89
30.6
M2_90
29.6
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