A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.3
nTPM
Monaco:
108.9
nTPM
Schmiedel:
55.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.3
HPA sample
nTPM
NK-cell nTPM: 39.2
Samples: 6
Max nTPM: 54.1
Min nTPM: 27.2
P10809_1013
28.2
P10809_1033
40.1
P10809_1052
46.4
P10809_1071
39.5
P10809_1093
27.2
P10809_1103
54.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.9
Monaco sample
nTPM
NK-cell nTPM: 108.9
Samples: 4
Max nTPM: 127.4
Min nTPM: 91.1
RHH5316_R3683
108.6
RHH5224_R3596
127.4
RHH5253_R3625
108.5
RHH5282_R3654
91.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.4
Schmiedel sample id
TPM
NK-cell TPM: 55.4
Samples: 90
Max TPM: 76.1
Min TPM: 33.4
NK_1
76.1
NK_2
73.7
NK_3
73.2
NK_4
73.1
NK_5
72.0
NK_6
70.8
NK_7
68.9
NK_8
68.7
NK_9
67.7
NK_10
67.3
NK_11
66.7
NK_12
66.3
NK_13
65.8
NK_14
65.7
NK_15
64.4
NK_16
64.1
NK_17
63.9
NK_18
63.8
NK_19
63.5
NK_20
63.4
NK_21
62.9
NK_22
62.8
NK_23
62.7
NK_24
62.0
NK_25
62.0
NK_26
61.5
NK_27
61.5
NK_28
61.4
NK_29
61.3
NK_30
61.0
NK_31
60.5
NK_32
60.0
NK_33
59.8
NK_34
59.6
NK_35
59.5
NK_36
59.4
NK_37
59.1
NK_38
58.2
NK_39
58.0
NK_40
57.9
NK_41
57.5
NK_42
55.8
NK_43
55.7
NK_44
54.8
NK_45
54.5
NK_46
54.5
NK_47
54.2
NK_48
54.2
NK_49
53.9
NK_50
53.7
NK_51
53.3
NK_52
53.1
NK_53
53.0
NK_54
52.8
NK_55
52.4
NK_56
52.4
NK_57
52.0
NK_58
51.9
NK_59
51.8
NK_60
50.8
NK_61
50.7
NK_62
50.3
NK_63
50.2
NK_64
50.2
NK_65
49.7
NK_66
48.7
NK_67
48.6
NK_68
48.4
NK_69
48.3
NK_70
48.3
NK_71
47.9
NK_72
47.0
NK_73
46.8
NK_74
46.4
NK_75
46.2
NK_76
45.8
NK_77
43.2
NK_78
43.2
NK_79
42.9
NK_80
42.8
NK_81
42.3
NK_82
41.7
NK_83
41.5
NK_84
39.8
NK_85
39.6
NK_86
39.5
NK_87
39.4
NK_88
38.9
NK_89
37.9
NK_90
33.4
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