A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
55.3
nTPM
Monaco:
135.3
nTPM
Schmiedel:
43.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.3
HPA sample
nTPM
Classical monocyte nTPM: 55.3
Samples: 6
Max nTPM: 63.2
Min nTPM: 44.6
P10809_1003
63.2
P10809_1020
61.0
P10809_1039
63.2
P10809_1058
44.6
P10809_1080
50.5
P10809_1107
49.3
Intermediate monocyte nTPM: 49.8
Samples: 6
Max nTPM: 62.3
Min nTPM: 36.3
P10809_1004
47.4
P10809_1023
57.6
P10809_1042
62.3
P10809_1061
54.6
P10809_1081
36.3
P10809_1108
40.5
Non-classical monocyte nTPM: 36.6
Samples: 5
Max nTPM: 57.9
Min nTPM: 19.3
P10809_1005
39.1
P10809_1053
57.9
P10809_1072
19.3
P10809_1082
24.3
P10809_1109
42.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.3
Monaco sample
nTPM
Classical monocyte nTPM: 135.3
Samples: 4
Max nTPM: 167.4
Min nTPM: 118.0
RHH5313_R3680
126.3
RHH5221_R3593
167.4
RHH5250_R3622
118.0
RHH5279_R3651
129.5
Intermediate monocyte nTPM: 107.8
Samples: 4
Max nTPM: 121.1
Min nTPM: 84.0
RHH5314_R3681
119.2
RHH5222_R3594
121.1
RHH5251_R3623
84.0
RHH5280_R3652
106.8
Non-classical monocyte nTPM: 101.6
Samples: 4
Max nTPM: 113.7
Min nTPM: 75.9
RHH5315_R3682
113.7
RHH5223_R3595
111.3
RHH5252_R3624
75.9
RHH5281_R3653
105.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.4
Schmiedel sample id
TPM
Classical monocyte TPM: 43.4
Samples: 91
Max TPM: 55.3
Min TPM: 29.3
MONOCYTES_1
55.3
MONOCYTES_2
53.6
MONOCYTES_3
52.7
MONOCYTES_4
52.1
MONOCYTES_5
51.3
MONOCYTES_6
51.2
MONOCYTES_7
50.7
MONOCYTES_8
50.5
MONOCYTES_9
50.1
MONOCYTES_10
49.3
MONOCYTES_11
49.2
MONOCYTES_12
48.4
MONOCYTES_13
48.3
MONOCYTES_14
48.2
MONOCYTES_15
47.7
MONOCYTES_16
47.7
MONOCYTES_17
47.6
MONOCYTES_18
47.5
MONOCYTES_19
46.9
MONOCYTES_20
46.8
MONOCYTES_21
46.7
MONOCYTES_22
46.4
MONOCYTES_23
46.3
MONOCYTES_24
46.0
MONOCYTES_25
45.8
MONOCYTES_26
45.8
MONOCYTES_27
45.8
MONOCYTES_28
45.6
MONOCYTES_29
45.4
MONOCYTES_30
45.3
MONOCYTES_31
45.3
MONOCYTES_32
45.1
MONOCYTES_33
44.9
MONOCYTES_34
44.9
MONOCYTES_35
44.8
MONOCYTES_36
44.6
MONOCYTES_37
44.5
MONOCYTES_38
44.3
MONOCYTES_39
44.3
MONOCYTES_40
44.2
MONOCYTES_41
44.1
MONOCYTES_42
44.0
MONOCYTES_43
44.0
MONOCYTES_44
43.9
MONOCYTES_45
43.6
MONOCYTES_46
43.5
MONOCYTES_47
43.3
MONOCYTES_48
43.1
MONOCYTES_49
43.0
MONOCYTES_50
43.0
MONOCYTES_51
43.0
MONOCYTES_52
42.8
MONOCYTES_53
42.7
MONOCYTES_54
42.7
MONOCYTES_55
42.6
MONOCYTES_56
42.5
MONOCYTES_57
42.5
MONOCYTES_58
42.4
MONOCYTES_59
41.9
MONOCYTES_60
41.9
MONOCYTES_61
41.6
MONOCYTES_62
41.6
MONOCYTES_63
41.5
MONOCYTES_64
41.1
MONOCYTES_65
41.0
MONOCYTES_66
41.0
MONOCYTES_67
40.7
MONOCYTES_68
40.6
MONOCYTES_69
40.6
MONOCYTES_70
40.4
MONOCYTES_71
40.4
MONOCYTES_72
40.1
MONOCYTES_73
40.0
MONOCYTES_74
40.0
MONOCYTES_75
39.9
MONOCYTES_76
39.6
MONOCYTES_77
39.3
MONOCYTES_78
39.3
MONOCYTES_79
38.9
MONOCYTES_80
38.8
MONOCYTES_81
37.6
MONOCYTES_82
36.3
MONOCYTES_83
36.1
MONOCYTES_84
35.5
MONOCYTES_85
35.5
MONOCYTES_86
35.3
MONOCYTES_87
35.0
MONOCYTES_88
32.7
MONOCYTES_89
32.5
MONOCYTES_90
32.4
MONOCYTES_91
29.3
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Non-classical monocyte TPM: 39.9
Samples: 90
Max TPM: 50.9
Min TPM: 22.6
M2_1
50.9
M2_2
50.4
M2_3
48.6
M2_4
48.3
M2_5
48.1
M2_6
47.7
M2_7
47.1
M2_8
46.8
M2_9
46.6
M2_10
46.5
M2_11
46.4
M2_12
46.1
M2_13
46.1
M2_14
45.9
M2_15
45.8
M2_16
45.4
M2_17
45.4
M2_18
45.2
M2_19
45.2
M2_20
45.0
M2_21
44.9
M2_22
44.8
M2_23
44.0
M2_24
43.8
M2_25
43.7
M2_26
43.6
M2_27
43.3
M2_28
43.1
M2_29
43.0
M2_30
42.6
M2_31
42.5
M2_32
42.4
M2_33
42.3
M2_34
42.1
M2_35
41.9
M2_36
41.7
M2_37
41.5
M2_38
41.4
M2_39
41.2
M2_40
41.1
M2_41
40.8
M2_42
40.7
M2_43
40.6
M2_44
40.6
M2_45
40.5
M2_46
40.5
M2_47
40.2
M2_48
40.1
M2_49
40.0
M2_50
39.9
M2_51
39.9
M2_52
39.7
M2_53
39.3
M2_54
39.3
M2_55
39.1
M2_56
39.1
M2_57
39.1
M2_58
39.0
M2_59
38.6
M2_60
38.5
M2_61
38.5
M2_62
38.1
M2_63
37.8
M2_64
37.6
M2_65
37.4
M2_66
37.2
M2_67
37.2
M2_68
37.0
M2_69
37.0
M2_70
36.2
M2_71
35.3
M2_72
35.3
M2_73
35.1
M2_74
34.7
M2_75
34.1
M2_76
34.1
M2_77
34.0
M2_78
32.6
M2_79
32.2
M2_80
32.1
M2_81
32.0
M2_82
31.7
M2_83
31.5
M2_84
31.3
M2_85
29.9
M2_86
28.8
M2_87
28.4
M2_88
27.4
M2_89
25.0
M2_90
22.6
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