A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.0
nTPM
Monaco:
55.4
nTPM
Schmiedel:
102.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.0
HPA sample
nTPM
Memory B-cell nTPM: 3.0
Samples: 6
Max nTPM: 7.6
Min nTPM: 0.9
P10809_1017
4.0
P10809_1025
0.9
P10809_1044
7.6
P10809_1063
2.8
P10809_1092
0.9
P10809_1105
2.0
Naive B-cell nTPM: 7.0
Samples: 6
Max nTPM: 11.7
Min nTPM: 0.8
P10809_1011
11.7
P10809_1029
6.3
P10809_1048
0.8
P10809_1067
7.3
P10809_1091
6.0
P10809_1104
9.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 34.5
Samples: 4
Max nTPM: 42.3
Min nTPM: 19.0
RHH5310_R3677
35.4
RHH5218_R3590
42.3
RHH5247_R3619
19.0
RHH5276_R3648
41.3
Naive B-cell nTPM: 55.5
Samples: 4
Max nTPM: 56.8
Min nTPM: 53.6
RHH5308_R3675
55.1
RHH5216_R3588
56.3
RHH5245_R3617
53.6
RHH5274_R3646
56.8
Non-switched memory B-cell nTPM: 15.5
Samples: 4
Max nTPM: 20.4
Min nTPM: 8.6
RHH5309_R3676
12.6
RHH5217_R3589
20.4
RHH5246_R3618
20.2
RHH5275_R3647
8.6
Plasmablast nTPM: 25.3
Samples: 4
Max nTPM: 36.3
Min nTPM: 17.1
RHH5312_R3679
24.9
RHH5220_R3592
36.3
RHH5249_R3621
22.8
RHH5278_R3650
17.1
Switched memory B-cell nTPM: 16.0
Samples: 4
Max nTPM: 20.6
Min nTPM: 11.2
RHH5311_R3678
11.2
RHH5219_R3591
20.6
RHH5248_R3620
18.2
RHH5277_R3649
13.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.3
Schmiedel sample id
TPM
Naive B-cell TPM: 102.3
Samples: 91
Max TPM: 147.0
Min TPM: 45.5
B_CELL_NAIVE_1
147.0
B_CELL_NAIVE_2
140.6
B_CELL_NAIVE_3
140.5
B_CELL_NAIVE_4
140.4
B_CELL_NAIVE_5
137.3
B_CELL_NAIVE_6
135.4
B_CELL_NAIVE_7
134.2
B_CELL_NAIVE_8
134.0
B_CELL_NAIVE_9
133.7
B_CELL_NAIVE_10
132.1
B_CELL_NAIVE_11
130.8
B_CELL_NAIVE_12
130.7
B_CELL_NAIVE_13
129.8
B_CELL_NAIVE_14
127.4
B_CELL_NAIVE_15
124.3
B_CELL_NAIVE_16
123.5
B_CELL_NAIVE_17
122.3
B_CELL_NAIVE_18
120.1
B_CELL_NAIVE_19
119.6
B_CELL_NAIVE_20
119.5
B_CELL_NAIVE_21
119.1
B_CELL_NAIVE_22
118.4
B_CELL_NAIVE_23
117.0
B_CELL_NAIVE_24
116.8
B_CELL_NAIVE_25
115.6
B_CELL_NAIVE_26
115.3
B_CELL_NAIVE_27
115.0
B_CELL_NAIVE_28
113.2
B_CELL_NAIVE_29
113.1
B_CELL_NAIVE_30
111.8
B_CELL_NAIVE_31
111.6
B_CELL_NAIVE_32
111.5
B_CELL_NAIVE_33
110.4
B_CELL_NAIVE_34
110.1
B_CELL_NAIVE_35
108.4
B_CELL_NAIVE_36
107.7
B_CELL_NAIVE_37
107.6
B_CELL_NAIVE_38
107.1
B_CELL_NAIVE_39
106.9
B_CELL_NAIVE_40
106.7
B_CELL_NAIVE_41
105.7
B_CELL_NAIVE_42
105.1
B_CELL_NAIVE_43
104.1
B_CELL_NAIVE_44
103.9
B_CELL_NAIVE_45
103.7
B_CELL_NAIVE_46
103.4
B_CELL_NAIVE_47
103.2
B_CELL_NAIVE_48
103.1
B_CELL_NAIVE_49
102.0
B_CELL_NAIVE_50
101.3
B_CELL_NAIVE_51
101.1
B_CELL_NAIVE_52
100.2
B_CELL_NAIVE_53
99.9
B_CELL_NAIVE_54
98.9
B_CELL_NAIVE_55
96.6
B_CELL_NAIVE_56
96.0
B_CELL_NAIVE_57
95.6
B_CELL_NAIVE_58
95.2
B_CELL_NAIVE_59
94.7
B_CELL_NAIVE_60
94.2
B_CELL_NAIVE_61
93.0
B_CELL_NAIVE_62
91.1
B_CELL_NAIVE_63
91.1
B_CELL_NAIVE_64
90.2
B_CELL_NAIVE_65
89.6
B_CELL_NAIVE_66
88.4
B_CELL_NAIVE_67
86.9
B_CELL_NAIVE_68
86.8
B_CELL_NAIVE_69
86.6
B_CELL_NAIVE_70
86.1
B_CELL_NAIVE_71
85.6
B_CELL_NAIVE_72
85.3
B_CELL_NAIVE_73
84.6
B_CELL_NAIVE_74
84.0
B_CELL_NAIVE_75
83.9
B_CELL_NAIVE_76
83.7
B_CELL_NAIVE_77
82.2
B_CELL_NAIVE_78
81.6
B_CELL_NAIVE_79
79.4
B_CELL_NAIVE_80
76.9
B_CELL_NAIVE_81
76.7
B_CELL_NAIVE_82
72.9
B_CELL_NAIVE_83
72.0
B_CELL_NAIVE_84
68.1
B_CELL_NAIVE_85
67.8
B_CELL_NAIVE_86
67.6
B_CELL_NAIVE_87
66.3
B_CELL_NAIVE_88
61.9
B_CELL_NAIVE_89
60.8
B_CELL_NAIVE_90
59.8
B_CELL_NAIVE_91
45.5
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The Human Protein Atlas project is funded
