A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.3
nTPM
Monaco:
93.3
nTPM
Schmiedel:
100.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.3
HPA sample
nTPM
NK-cell nTPM: 8.3
Samples: 6
Max nTPM: 21.3
Min nTPM: 2.9
P10809_1013
6.7
P10809_1033
5.4
P10809_1052
7.2
P10809_1071
21.3
P10809_1093
2.9
P10809_1103
6.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.3
Monaco sample
nTPM
NK-cell nTPM: 93.3
Samples: 4
Max nTPM: 109.9
Min nTPM: 73.0
RHH5316_R3683
95.1
RHH5224_R3596
109.9
RHH5253_R3625
95.0
RHH5282_R3654
73.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
100.1
Schmiedel sample id
TPM
NK-cell TPM: 100.1
Samples: 90
Max TPM: 141.9
Min TPM: 56.6
NK_1
141.9
NK_2
140.9
NK_3
140.7
NK_4
133.9
NK_5
133.1
NK_6
132.7
NK_7
131.8
NK_8
131.8
NK_9
127.9
NK_10
127.7
NK_11
127.6
NK_12
127.6
NK_13
126.6
NK_14
126.2
NK_15
123.9
NK_16
123.8
NK_17
123.2
NK_18
121.4
NK_19
119.6
NK_20
119.2
NK_21
118.4
NK_22
117.8
NK_23
117.1
NK_24
116.8
NK_25
115.4
NK_26
112.8
NK_27
111.5
NK_28
110.9
NK_29
110.7
NK_30
110.2
NK_31
109.4
NK_32
109.4
NK_33
109.1
NK_34
108.4
NK_35
108.1
NK_36
107.5
NK_37
107.1
NK_38
106.2
NK_39
105.2
NK_40
104.7
NK_41
104.1
NK_42
103.8
NK_43
103.2
NK_44
102.0
NK_45
100.4
NK_46
99.8
NK_47
99.4
NK_48
98.4
NK_49
98.3
NK_50
97.3
NK_51
97.1
NK_52
97.1
NK_53
96.7
NK_54
96.0
NK_55
94.7
NK_56
94.1
NK_57
93.3
NK_58
93.1
NK_59
92.0
NK_60
91.1
NK_61
90.5
NK_62
90.4
NK_63
88.5
NK_64
86.9
NK_65
85.9
NK_66
85.9
NK_67
83.7
NK_68
83.6
NK_69
82.5
NK_70
81.7
NK_71
81.0
NK_72
80.3
NK_73
79.7
NK_74
75.3
NK_75
74.8
NK_76
74.1
NK_77
72.1
NK_78
71.9
NK_79
71.7
NK_80
70.5
NK_81
70.5
NK_82
70.3
NK_83
69.2
NK_84
68.9
NK_85
67.1
NK_86
66.0
NK_87
64.1
NK_88
59.4
NK_89
56.9
NK_90
56.6
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