MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:94.6 nTPM
HPA Brain:196.8 nTPM
GTEx:94.6 nTPM
FANTOM5:116.5 Scaled Tags Per Million
Pig:113.5 nTPM
Mouse:185.3 nTPM
Allen mouse:9.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 196.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 185.5
2586 Male, age 75, left hemisphere 250.5
2666 Male, age 74, left hemisphere 204.9
2828 Female, age 72, unknown 196.3
1870 Female, age 42, unknown 182.4
2219 Male, age 76, both hemispheres 178.2
1827 Male, age 72, unknown 176.9
1833 Male, age 53, unknown 172.4
2019 Male, age 18, unknown 167.5
1830 Male, age 51, unknown 166.7
2411 Female, age 72, unknown 159.5
Dorsal raphe nucleus
nTPM: 160.9
2047 Male, age 72, unknown 180.8
2750 Male, age 76, both hemispheres 165.6
1828 Male, age 53, unknown 162.8
2016 Female, age 72, unknown 155.2
2298 Female, age 72, unknown 140.0
Inferior colliculus
nTPM: 163.4
2849 Male, age 72, unknown 181.0
1848 Female, age 42, unknown 171.2
1890 Male, age 53, unknown 157.4
2097 Female, age 72, unknown 144.0
Median raphe nucleus
nTPM: 172.3
2220 Male, age 76, midline 172.3
Periaquaductal grey, anterior
nTPM: 174.1
1947 Male, age 18, unknown 183.7
1795 Male, age 51, unknown 171.1
2502 Female, age 75, unknown 167.5
Periaquaductal grey, dorsal
nTPM: 150.8
2850 Male, age 76, both hemispheres 165.8
1840 Male, age 53, unknown 155.6
1831 Male, age 72, unknown 142.3
2464 Female, age 72, unknown 139.6
Periaquaductal grey, lateral
nTPM: 150.7
2053 Male, age 18, unknown 164.8
2272 Male, age 74, both hemispheres 146.2
2140 Male, age 76, both hemispheres 141.0
Pretectal area
nTPM: 171.3
1817 Female, age 42, unknown 208.0
1816 Male, age 51, unknown 191.1
1815 Male, age 53, unknown 189.9
2007 Male, age 72, unknown 185.3
1944 Female, age 72, unknown 181.1
2667 Female, age 75, unknown 179.6
2825 Male, age 18, unknown 163.5
2407 Male, age 75, both hemispheres 160.7
2316 Male, age 76, right hemisphere 149.7
2224 Female, age 72, unknown 147.9
2273 Male, age 74, both hemispheres 128.1
Red nucleus
nTPM: 196.8
2588 Male, age 74, left hemisphere 221.2
1904 Male, age 53, unknown 211.0
1954 Female, age 42, unknown 207.8
2823 Male, age 76, right hemisphere 206.8
2503 Female, age 72, unknown 203.8
1865 Male, age 51, unknown 200.2
1821 Female, age 72, unknown 194.4
2769 Male, age 72, unknown 191.7
2227 Male, age 72, unknown 187.4
2725 Female, age 75, unknown 182.0
2785 Male, age 18, unknown 179.4
2584 Male, age 75, left hemisphere 175.5
Substantia nigra
nTPM: 192.5
2665 Male, age 74, both hemispheres 222.4
1916 Female, age 42, unknown 219.3
2699 Male, age 18, unknown 204.7
1851 Male, age 51, unknown 203.7
2590 Female, age 75, unknown 188.5
2583 Male, age 75, right hemisphere 186.9
1889 Female, age 72, unknown 181.7
1941 Male, age 53, unknown 177.4
2241 Male, age 72, unknown 175.0
2409 Female, age 72, unknown 166.0
Superior colliculus
nTPM: 171.3
2664 Male, age 75, both hemispheres 193.9
2668 Female, age 75, unknown 184.2
1796 Male, age 53, unknown 183.2
2261 Male, age 18, unknown 172.7
1895 Male, age 76, right hemisphere 166.7
2587 Male, age 74, left hemisphere 165.0
1839 Male, age 51, unknown 164.5
2087 Female, age 72, unknown 163.9
1995 Male, age 72, unknown 161.5
1913 Female, age 42, unknown 157.7
Ventral tegmental area
nTPM: 171.6
1915 Female, age 42, unknown 183.5
2218 Male, age 76, both hemispheres 180.0
2410 Female, age 72, unknown 175.7
2223 Female, age 72, unknown 175.4
1942 Male, age 51, unknown 163.9
2021 Male, age 53, unknown 151.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 94.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.6
Samples: 183

Max nTPM: 173.3
Min nTPM: 49.3
Std nTPM: 19.2
Median nTPM: 91.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 173.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 164.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 151.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 148.9
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 146.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 138.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 137.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 134.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 133.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 133.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 132.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 116.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.5
FF:10158-103A5 76 years, female 116.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 113.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 107.7
Samples: 4

Max nTPM: 114.3
Min nTPM: 92.4
Sample A Female 113.4
Sample B Female 92.4
Sample C Male 110.8
Sample D Male 114.3
Midbrain
nTPM: 113.6
Samples: 4

Max nTPM: 117.6
Min nTPM: 109.6
Sample A Female 116.9
Sample B Female 109.6
Sample C Male 117.6
Sample D Male 110.2
Periaqueductal gray
nTPM: 95.1
Samples: 3

Max nTPM: 101.6
Min nTPM: 84.5
Sample B Female 101.6
Sample C Male 99.2
Sample D Male 84.5
Superior colliculi
nTPM: 107.3
Samples: 4

Max nTPM: 121.6
Min nTPM: 86.3
Sample A Female 113.2
Sample B Female 86.3
Sample C Male 108.2
Sample D Male 121.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 185.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 185.3
Samples: 4

Max nTPM: 191.5
Min nTPM: 177.7
Sample A Male 177.7
Sample B Male 181.2
Sample C Female 190.8
Sample D Female 191.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
68631935 Antisense, RP_050125_01_D06, Mouse strain C57BL/6J (56 days, male) 9.8

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