A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.6
nTPM
Monaco:
130.0
nTPM
Schmiedel:
145.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.6
HPA sample
nTPM
Memory B-cell nTPM: 23.4
Samples: 6
Max nTPM: 31.1
Min nTPM: 5.8
P10809_1017
31.1
P10809_1025
29.5
P10809_1044
5.8
P10809_1063
18.6
P10809_1092
26.2
P10809_1105
29.3
Naive B-cell nTPM: 30.5
Samples: 6
Max nTPM: 34.6
Min nTPM: 23.8
P10809_1011
30.7
P10809_1029
27.7
P10809_1048
23.8
P10809_1067
33.0
P10809_1091
33.5
P10809_1104
34.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
130.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 94.6
Samples: 4
Max nTPM: 109.2
Min nTPM: 65.7
RHH5310_R3677
95.5
RHH5218_R3590
65.7
RHH5247_R3619
108.2
RHH5276_R3648
109.2
Naive B-cell nTPM: 130.0
Samples: 4
Max nTPM: 167.0
Min nTPM: 103.2
RHH5308_R3675
103.2
RHH5216_R3588
127.3
RHH5245_R3617
167.0
RHH5274_R3646
122.3
Non-switched memory B-cell nTPM: 100.9
Samples: 4
Max nTPM: 110.9
Min nTPM: 77.2
RHH5309_R3676
77.2
RHH5217_R3589
110.9
RHH5246_R3618
109.4
RHH5275_R3647
105.9
Plasmablast nTPM: 116.7
Samples: 4
Max nTPM: 123.5
Min nTPM: 110.1
RHH5312_R3679
123.5
RHH5220_R3592
114.4
RHH5249_R3621
118.9
RHH5278_R3650
110.1
Switched memory B-cell nTPM: 105.2
Samples: 4
Max nTPM: 122.7
Min nTPM: 92.1
RHH5311_R3678
95.4
RHH5219_R3591
92.1
RHH5248_R3620
122.7
RHH5277_R3649
110.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
145.3
Schmiedel sample id
TPM
Naive B-cell TPM: 145.3
Samples: 91
Max TPM: 184.5
Min TPM: 113.2
B_CELL_NAIVE_1
184.5
B_CELL_NAIVE_2
179.1
B_CELL_NAIVE_3
172.5
B_CELL_NAIVE_4
169.9
B_CELL_NAIVE_5
167.4
B_CELL_NAIVE_6
164.2
B_CELL_NAIVE_7
164.0
B_CELL_NAIVE_8
161.5
B_CELL_NAIVE_9
161.2
B_CELL_NAIVE_10
160.5
B_CELL_NAIVE_11
160.5
B_CELL_NAIVE_12
160.3
B_CELL_NAIVE_13
160.0
B_CELL_NAIVE_14
159.2
B_CELL_NAIVE_15
159.0
B_CELL_NAIVE_16
158.6
B_CELL_NAIVE_17
158.5
B_CELL_NAIVE_18
158.2
B_CELL_NAIVE_19
157.5
B_CELL_NAIVE_20
156.8
B_CELL_NAIVE_21
156.0
B_CELL_NAIVE_22
155.8
B_CELL_NAIVE_23
155.7
B_CELL_NAIVE_24
155.4
B_CELL_NAIVE_25
155.1
B_CELL_NAIVE_26
154.5
B_CELL_NAIVE_27
154.2
B_CELL_NAIVE_28
154.2
B_CELL_NAIVE_29
153.6
B_CELL_NAIVE_30
153.5
B_CELL_NAIVE_31
153.5
B_CELL_NAIVE_32
153.0
B_CELL_NAIVE_33
152.1
B_CELL_NAIVE_34
151.9
B_CELL_NAIVE_35
151.8
B_CELL_NAIVE_36
151.0
B_CELL_NAIVE_37
150.2
B_CELL_NAIVE_38
148.7
B_CELL_NAIVE_39
148.1
B_CELL_NAIVE_40
147.5
B_CELL_NAIVE_41
147.4
B_CELL_NAIVE_42
147.4
B_CELL_NAIVE_43
146.0
B_CELL_NAIVE_44
145.2
B_CELL_NAIVE_45
145.1
B_CELL_NAIVE_46
145.0
B_CELL_NAIVE_47
144.1
B_CELL_NAIVE_48
143.9
B_CELL_NAIVE_49
143.5
B_CELL_NAIVE_50
143.4
B_CELL_NAIVE_51
142.9
B_CELL_NAIVE_52
142.4
B_CELL_NAIVE_53
142.0
B_CELL_NAIVE_54
141.8
B_CELL_NAIVE_55
141.7
B_CELL_NAIVE_56
141.5
B_CELL_NAIVE_57
141.4
B_CELL_NAIVE_58
141.4
B_CELL_NAIVE_59
140.7
B_CELL_NAIVE_60
140.5
B_CELL_NAIVE_61
139.7
B_CELL_NAIVE_62
139.6
B_CELL_NAIVE_63
139.4
B_CELL_NAIVE_64
138.9
B_CELL_NAIVE_65
137.6
B_CELL_NAIVE_66
137.3
B_CELL_NAIVE_67
136.7
B_CELL_NAIVE_68
136.4
B_CELL_NAIVE_69
136.2
B_CELL_NAIVE_70
135.5
B_CELL_NAIVE_71
135.3
B_CELL_NAIVE_72
135.1
B_CELL_NAIVE_73
134.6
B_CELL_NAIVE_74
131.3
B_CELL_NAIVE_75
130.9
B_CELL_NAIVE_76
130.9
B_CELL_NAIVE_77
130.7
B_CELL_NAIVE_78
130.3
B_CELL_NAIVE_79
128.2
B_CELL_NAIVE_80
127.1
B_CELL_NAIVE_81
125.0
B_CELL_NAIVE_82
125.0
B_CELL_NAIVE_83
123.3
B_CELL_NAIVE_84
123.2
B_CELL_NAIVE_85
122.6
B_CELL_NAIVE_86
121.5
B_CELL_NAIVE_87
121.1
B_CELL_NAIVE_88
119.7
B_CELL_NAIVE_89
119.5
B_CELL_NAIVE_90
117.6
B_CELL_NAIVE_91
113.2
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