A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.3
nTPM
Monaco:
52.6
nTPM
Schmiedel:
79.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.3
HPA sample
nTPM
Classical monocyte nTPM: 7.5
Samples: 6
Max nTPM: 8.0
Min nTPM: 7.1
P10809_1003
7.1
P10809_1020
8.0
P10809_1039
7.6
P10809_1058
7.1
P10809_1080
7.4
P10809_1107
7.9
Intermediate monocyte nTPM: 7.3
Samples: 6
Max nTPM: 9.4
Min nTPM: 5.3
P10809_1004
8.1
P10809_1023
7.9
P10809_1042
5.3
P10809_1061
7.0
P10809_1081
5.9
P10809_1108
9.4
Non-classical monocyte nTPM: 11.4
Samples: 5
Max nTPM: 23.8
Min nTPM: 6.8
P10809_1005
8.8
P10809_1053
9.2
P10809_1072
23.8
P10809_1082
6.8
P10809_1109
8.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.6
Monaco sample
nTPM
Classical monocyte nTPM: 40.2
Samples: 4
Max nTPM: 43.6
Min nTPM: 35.0
RHH5313_R3680
35.0
RHH5221_R3593
43.6
RHH5250_R3622
42.3
RHH5279_R3651
39.9
Intermediate monocyte nTPM: 52.6
Samples: 4
Max nTPM: 74.4
Min nTPM: 32.1
RHH5314_R3681
38.8
RHH5222_R3594
64.9
RHH5251_R3623
74.4
RHH5280_R3652
32.1
Non-classical monocyte nTPM: 45.2
Samples: 4
Max nTPM: 51.1
Min nTPM: 31.6
RHH5315_R3682
50.5
RHH5223_R3595
47.5
RHH5252_R3624
51.1
RHH5281_R3653
31.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.3
Schmiedel sample id
TPM
Classical monocyte TPM: 53.6
Samples: 91
Max TPM: 70.5
Min TPM: 39.9
MONOCYTES_1
70.5
MONOCYTES_2
65.6
MONOCYTES_3
63.9
MONOCYTES_4
63.0
MONOCYTES_5
62.5
MONOCYTES_6
62.5
MONOCYTES_7
62.1
MONOCYTES_8
61.8
MONOCYTES_9
61.7
MONOCYTES_10
61.6
MONOCYTES_11
61.4
MONOCYTES_12
61.1
MONOCYTES_13
60.8
MONOCYTES_14
60.1
MONOCYTES_15
60.0
MONOCYTES_16
60.0
MONOCYTES_17
59.8
MONOCYTES_18
59.2
MONOCYTES_19
59.1
MONOCYTES_20
58.9
MONOCYTES_21
58.8
MONOCYTES_22
58.7
MONOCYTES_23
58.4
MONOCYTES_24
58.1
MONOCYTES_25
58.1
MONOCYTES_26
57.9
MONOCYTES_27
57.8
MONOCYTES_28
57.5
MONOCYTES_29
57.1
MONOCYTES_30
56.6
MONOCYTES_31
56.5
MONOCYTES_32
56.4
MONOCYTES_33
56.1
MONOCYTES_34
56.0
MONOCYTES_35
56.0
MONOCYTES_36
56.0
MONOCYTES_37
55.1
MONOCYTES_38
55.0
MONOCYTES_39
54.8
MONOCYTES_40
54.7
MONOCYTES_41
54.4
MONOCYTES_42
54.3
MONOCYTES_43
54.3
MONOCYTES_44
54.0
MONOCYTES_45
53.7
MONOCYTES_46
53.5
MONOCYTES_47
53.4
MONOCYTES_48
53.3
MONOCYTES_49
53.3
MONOCYTES_50
52.7
MONOCYTES_51
52.6
MONOCYTES_52
52.3
MONOCYTES_53
52.2
MONOCYTES_54
52.2
MONOCYTES_55
51.9
MONOCYTES_56
51.9
MONOCYTES_57
51.8
MONOCYTES_58
51.5
MONOCYTES_59
51.3
MONOCYTES_60
51.1
MONOCYTES_61
51.0
MONOCYTES_62
51.0
MONOCYTES_63
50.8
MONOCYTES_64
50.5
MONOCYTES_65
50.4
MONOCYTES_66
50.3
MONOCYTES_67
50.2
MONOCYTES_68
50.1
MONOCYTES_69
49.7
MONOCYTES_70
49.6
MONOCYTES_71
49.2
MONOCYTES_72
48.6
MONOCYTES_73
48.4
MONOCYTES_74
48.4
MONOCYTES_75
48.3
MONOCYTES_76
48.2
MONOCYTES_77
48.0
MONOCYTES_78
47.7
MONOCYTES_79
46.9
MONOCYTES_80
46.8
MONOCYTES_81
46.6
MONOCYTES_82
45.3
MONOCYTES_83
45.2
MONOCYTES_84
43.9
MONOCYTES_85
43.0
MONOCYTES_86
42.7
MONOCYTES_87
42.0
MONOCYTES_88
41.0
MONOCYTES_89
40.7
MONOCYTES_90
40.3
MONOCYTES_91
39.9
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Non-classical monocyte TPM: 79.3
Samples: 90
Max TPM: 112.0
Min TPM: 59.8
M2_1
112.0
M2_2
105.4
M2_3
102.9
M2_4
94.5
M2_5
93.9
M2_6
93.4
M2_7
93.2
M2_8
92.8
M2_9
92.7
M2_10
92.2
M2_11
91.5
M2_12
90.6
M2_13
90.3
M2_14
89.6
M2_15
89.1
M2_16
88.6
M2_17
88.4
M2_18
88.3
M2_19
88.3
M2_20
88.2
M2_21
87.0
M2_22
85.9
M2_23
84.2
M2_24
83.9
M2_25
83.9
M2_26
83.8
M2_27
82.9
M2_28
82.9
M2_29
82.4
M2_30
82.3
M2_31
81.7
M2_32
81.6
M2_33
81.5
M2_34
81.1
M2_35
80.6
M2_36
80.5
M2_37
80.0
M2_38
79.8
M2_39
79.6
M2_40
79.5
M2_41
79.1
M2_42
78.7
M2_43
78.7
M2_44
78.3
M2_45
78.2
M2_46
78.1
M2_47
78.0
M2_48
77.9
M2_49
77.6
M2_50
77.5
M2_51
77.5
M2_52
77.2
M2_53
76.8
M2_54
76.4
M2_55
76.2
M2_56
76.2
M2_57
76.1
M2_58
76.1
M2_59
76.0
M2_60
75.9
M2_61
75.5
M2_62
75.1
M2_63
75.0
M2_64
73.7
M2_65
73.4
M2_66
73.1
M2_67
73.1
M2_68
73.0
M2_69
72.5
M2_70
72.5
M2_71
72.1
M2_72
71.8
M2_73
71.4
M2_74
70.8
M2_75
70.2
M2_76
69.9
M2_77
69.9
M2_78
69.9
M2_79
68.5
M2_80
68.4
M2_81
68.0
M2_82
67.7
M2_83
67.4
M2_84
65.2
M2_85
65.0
M2_86
64.8
M2_87
61.5
M2_88
60.0
M2_89
59.9
M2_90
59.8
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