A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
109.2
nTPM
Monaco:
171.3
nTPM
Schmiedel:
38.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.2
HPA sample
nTPM
Memory B-cell nTPM: 109.2
Samples: 6
Max nTPM: 137.6
Min nTPM: 90.9
P10809_1017
97.6
P10809_1025
114.1
P10809_1044
137.6
P10809_1063
90.9
P10809_1092
110.8
P10809_1105
104.4
Naive B-cell nTPM: 91.3
Samples: 6
Max nTPM: 134.6
Min nTPM: 64.8
P10809_1011
64.8
P10809_1029
79.9
P10809_1048
134.6
P10809_1067
81.3
P10809_1091
90.6
P10809_1104
96.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 102.7
Samples: 4
Max nTPM: 137.5
Min nTPM: 74.3
RHH5310_R3677
137.5
RHH5218_R3590
91.4
RHH5247_R3619
107.6
RHH5276_R3648
74.3
Naive B-cell nTPM: 88.0
Samples: 4
Max nTPM: 121.1
Min nTPM: 66.0
RHH5308_R3675
121.1
RHH5216_R3588
87.7
RHH5245_R3617
66.0
RHH5274_R3646
77.0
Non-switched memory B-cell nTPM: 90.8
Samples: 4
Max nTPM: 104.9
Min nTPM: 69.7
RHH5309_R3676
104.9
RHH5217_R3589
100.4
RHH5246_R3618
88.2
RHH5275_R3647
69.7
Plasmablast nTPM: 171.3
Samples: 4
Max nTPM: 201.5
Min nTPM: 134.9
RHH5312_R3679
165.7
RHH5220_R3592
183.1
RHH5249_R3621
201.5
RHH5278_R3650
134.9
Switched memory B-cell nTPM: 100.9
Samples: 4
Max nTPM: 130.4
Min nTPM: 74.8
RHH5311_R3678
113.9
RHH5219_R3591
130.4
RHH5248_R3620
84.3
RHH5277_R3649
74.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.5
Schmiedel sample id
TPM
Naive B-cell TPM: 38.5
Samples: 91
Max TPM: 54.4
Min TPM: 29.8
B_CELL_NAIVE_1
54.4
B_CELL_NAIVE_2
51.4
B_CELL_NAIVE_3
50.9
B_CELL_NAIVE_4
50.9
B_CELL_NAIVE_5
49.5
B_CELL_NAIVE_6
49.5
B_CELL_NAIVE_7
46.9
B_CELL_NAIVE_8
45.5
B_CELL_NAIVE_9
44.6
B_CELL_NAIVE_10
44.2
B_CELL_NAIVE_11
43.9
B_CELL_NAIVE_12
43.7
B_CELL_NAIVE_13
43.4
B_CELL_NAIVE_14
43.4
B_CELL_NAIVE_15
42.8
B_CELL_NAIVE_16
42.6
B_CELL_NAIVE_17
42.5
B_CELL_NAIVE_18
42.0
B_CELL_NAIVE_19
41.9
B_CELL_NAIVE_20
41.8
B_CELL_NAIVE_21
41.7
B_CELL_NAIVE_22
41.5
B_CELL_NAIVE_23
41.4
B_CELL_NAIVE_24
41.4
B_CELL_NAIVE_25
41.2
B_CELL_NAIVE_26
41.0
B_CELL_NAIVE_27
40.4
B_CELL_NAIVE_28
40.4
B_CELL_NAIVE_29
40.1
B_CELL_NAIVE_30
39.9
B_CELL_NAIVE_31
39.8
B_CELL_NAIVE_32
39.6
B_CELL_NAIVE_33
39.4
B_CELL_NAIVE_34
39.4
B_CELL_NAIVE_35
39.2
B_CELL_NAIVE_36
39.1
B_CELL_NAIVE_37
39.0
B_CELL_NAIVE_38
38.5
B_CELL_NAIVE_39
38.4
B_CELL_NAIVE_40
38.1
B_CELL_NAIVE_41
38.0
B_CELL_NAIVE_42
38.0
B_CELL_NAIVE_43
38.0
B_CELL_NAIVE_44
37.9
B_CELL_NAIVE_45
37.8
B_CELL_NAIVE_46
37.7
B_CELL_NAIVE_47
37.7
B_CELL_NAIVE_48
37.5
B_CELL_NAIVE_49
37.5
B_CELL_NAIVE_50
37.4
B_CELL_NAIVE_51
37.1
B_CELL_NAIVE_52
37.0
B_CELL_NAIVE_53
36.9
B_CELL_NAIVE_54
36.7
B_CELL_NAIVE_55
36.6
B_CELL_NAIVE_56
36.6
B_CELL_NAIVE_57
36.5
B_CELL_NAIVE_58
36.4
B_CELL_NAIVE_59
36.4
B_CELL_NAIVE_60
36.3
B_CELL_NAIVE_61
36.0
B_CELL_NAIVE_62
35.7
B_CELL_NAIVE_63
35.7
B_CELL_NAIVE_64
35.5
B_CELL_NAIVE_65
35.4
B_CELL_NAIVE_66
35.4
B_CELL_NAIVE_67
35.2
B_CELL_NAIVE_68
35.2
B_CELL_NAIVE_69
35.0
B_CELL_NAIVE_70
34.9
B_CELL_NAIVE_71
34.9
B_CELL_NAIVE_72
34.8
B_CELL_NAIVE_73
34.6
B_CELL_NAIVE_74
34.6
B_CELL_NAIVE_75
34.4
B_CELL_NAIVE_76
34.2
B_CELL_NAIVE_77
34.2
B_CELL_NAIVE_78
33.6
B_CELL_NAIVE_79
33.6
B_CELL_NAIVE_80
33.5
B_CELL_NAIVE_81
33.2
B_CELL_NAIVE_82
32.9
B_CELL_NAIVE_83
32.9
B_CELL_NAIVE_84
32.6
B_CELL_NAIVE_85
31.9
B_CELL_NAIVE_86
31.8
B_CELL_NAIVE_87
31.8
B_CELL_NAIVE_88
31.6
B_CELL_NAIVE_89
31.3
B_CELL_NAIVE_90
30.0
B_CELL_NAIVE_91
29.8
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The Human Protein Atlas project is funded
