A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
113.1
nTPM
Monaco:
117.3
nTPM
Schmiedel:
43.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.1
HPA sample
nTPM
Classical monocyte nTPM: 93.4
Samples: 6
Max nTPM: 102.6
Min nTPM: 79.4
P10809_1003
94.7
P10809_1020
99.5
P10809_1039
101.6
P10809_1058
82.7
P10809_1080
79.4
P10809_1107
102.6
Intermediate monocyte nTPM: 104.8
Samples: 6
Max nTPM: 134.4
Min nTPM: 72.9
P10809_1004
72.9
P10809_1023
123.8
P10809_1042
98.8
P10809_1061
105.2
P10809_1081
93.4
P10809_1108
134.4
Non-classical monocyte nTPM: 113.1
Samples: 5
Max nTPM: 145.6
Min nTPM: 97.6
P10809_1005
97.6
P10809_1053
101.4
P10809_1072
102.3
P10809_1082
118.4
P10809_1109
145.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.3
Monaco sample
nTPM
Classical monocyte nTPM: 117.3
Samples: 4
Max nTPM: 143.8
Min nTPM: 90.1
RHH5313_R3680
93.0
RHH5221_R3593
90.1
RHH5250_R3622
142.4
RHH5279_R3651
143.8
Intermediate monocyte nTPM: 110.3
Samples: 4
Max nTPM: 126.5
Min nTPM: 93.0
RHH5314_R3681
126.5
RHH5222_R3594
93.0
RHH5251_R3623
95.6
RHH5280_R3652
125.9
Non-classical monocyte nTPM: 104.9
Samples: 4
Max nTPM: 126.4
Min nTPM: 92.6
RHH5315_R3682
102.2
RHH5223_R3595
98.6
RHH5252_R3624
92.6
RHH5281_R3653
126.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.6
Schmiedel sample id
TPM
Classical monocyte TPM: 40.1
Samples: 91
Max TPM: 49.0
Min TPM: 29.7
MONOCYTES_1
49.0
MONOCYTES_2
48.9
MONOCYTES_3
48.8
MONOCYTES_4
48.8
MONOCYTES_5
47.9
MONOCYTES_6
47.7
MONOCYTES_7
47.6
MONOCYTES_8
46.5
MONOCYTES_9
46.1
MONOCYTES_10
45.5
MONOCYTES_11
44.7
MONOCYTES_12
44.6
MONOCYTES_13
44.4
MONOCYTES_14
44.4
MONOCYTES_15
44.4
MONOCYTES_16
44.2
MONOCYTES_17
43.7
MONOCYTES_18
43.7
MONOCYTES_19
43.6
MONOCYTES_20
43.5
MONOCYTES_21
43.3
MONOCYTES_22
42.7
MONOCYTES_23
42.4
MONOCYTES_24
42.3
MONOCYTES_25
42.1
MONOCYTES_26
41.7
MONOCYTES_27
41.7
MONOCYTES_28
41.6
MONOCYTES_29
41.6
MONOCYTES_30
41.1
MONOCYTES_31
41.1
MONOCYTES_32
41.0
MONOCYTES_33
40.9
MONOCYTES_34
40.9
MONOCYTES_35
40.9
MONOCYTES_36
40.6
MONOCYTES_37
40.3
MONOCYTES_38
40.2
MONOCYTES_39
40.1
MONOCYTES_40
40.1
MONOCYTES_41
39.8
MONOCYTES_42
39.7
MONOCYTES_43
39.6
MONOCYTES_44
39.6
MONOCYTES_45
39.4
MONOCYTES_46
39.3
MONOCYTES_47
39.1
MONOCYTES_48
39.0
MONOCYTES_49
39.0
MONOCYTES_50
38.9
MONOCYTES_51
38.8
MONOCYTES_52
38.7
MONOCYTES_53
38.7
MONOCYTES_54
38.5
MONOCYTES_55
38.4
MONOCYTES_56
38.3
MONOCYTES_57
38.2
MONOCYTES_58
38.1
MONOCYTES_59
38.0
MONOCYTES_60
37.9
MONOCYTES_61
37.9
MONOCYTES_62
37.9
MONOCYTES_63
37.7
MONOCYTES_64
37.6
MONOCYTES_65
37.4
MONOCYTES_66
37.2
MONOCYTES_67
37.2
MONOCYTES_68
37.2
MONOCYTES_69
37.2
MONOCYTES_70
37.1
MONOCYTES_71
37.1
MONOCYTES_72
36.8
MONOCYTES_73
36.8
MONOCYTES_74
36.7
MONOCYTES_75
36.6
MONOCYTES_76
36.5
MONOCYTES_77
36.5
MONOCYTES_78
36.5
MONOCYTES_79
36.4
MONOCYTES_80
36.4
MONOCYTES_81
36.4
MONOCYTES_82
36.4
MONOCYTES_83
36.3
MONOCYTES_84
36.0
MONOCYTES_85
36.0
MONOCYTES_86
35.8
MONOCYTES_87
35.4
MONOCYTES_88
35.0
MONOCYTES_89
33.2
MONOCYTES_90
32.6
MONOCYTES_91
29.7
Show allShow less
Non-classical monocyte TPM: 43.6
Samples: 90
Max TPM: 63.3
Min TPM: 29.8
M2_1
63.3
M2_2
62.2
M2_3
57.9
M2_4
57.5
M2_5
57.5
M2_6
55.3
M2_7
54.3
M2_8
53.4
M2_9
53.1
M2_10
52.9
M2_11
52.5
M2_12
52.1
M2_13
49.8
M2_14
48.8
M2_15
48.4
M2_16
48.2
M2_17
48.1
M2_18
48.1
M2_19
48.0
M2_20
47.8
M2_21
47.5
M2_22
47.2
M2_23
47.2
M2_24
47.1
M2_25
47.0
M2_26
47.0
M2_27
46.2
M2_28
46.1
M2_29
45.6
M2_30
45.6
M2_31
45.6
M2_32
45.2
M2_33
45.1
M2_34
44.9
M2_35
44.8
M2_36
44.6
M2_37
44.3
M2_38
44.1
M2_39
43.4
M2_40
43.4
M2_41
43.2
M2_42
42.9
M2_43
42.7
M2_44
42.5
M2_45
42.3
M2_46
42.3
M2_47
42.3
M2_48
42.2
M2_49
42.1
M2_50
42.0
M2_51
41.9
M2_52
41.7
M2_53
41.6
M2_54
41.4
M2_55
41.4
M2_56
41.2
M2_57
41.1
M2_58
40.8
M2_59
40.7
M2_60
40.5
M2_61
40.0
M2_62
39.9
M2_63
39.8
M2_64
39.7
M2_65
39.5
M2_66
39.3
M2_67
39.3
M2_68
39.2
M2_69
39.1
M2_70
38.8
M2_71
38.7
M2_72
38.5
M2_73
38.3
M2_74
38.0
M2_75
38.0
M2_76
37.7
M2_77
37.6
M2_78
37.4
M2_79
37.0
M2_80
36.9
M2_81
36.4
M2_82
36.3
M2_83
35.9
M2_84
35.7
M2_85
35.5
M2_86
35.1
M2_87
34.3
M2_88
34.0
M2_89
31.3
M2_90
29.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
