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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • GNAS
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:1024.3 nTPM
GTEx:1381.5 nTPM
FANTOM5:557.8 Scaled Tags Per Million
Macaque:931.2 nTPM
Pig:1581.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1024.3
Sample id Sample description nTPM
Substantia nigra
nTPM: 1024.3
1916 Female, age 42, unknown 1209.7
1889 Female, age 72, unknown 1208.3
1941 Male, age 53, unknown 1189.3
2665 Male, age 74, both hemispheres 1079.9
1851 Male, age 51, unknown 1020.7
2241 Male, age 72, unknown 1020.3
2699 Male, age 18, unknown 1011.7
2590 Female, age 75, unknown 913.6
2409 Female, age 72, unknown 799.0
2583 Male, age 75, right hemisphere 790.4

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1381.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1381.5
Samples: 183

Max nTPM: 4055.7
Min nTPM: 608.7
Std nTPM: 507.0
Median nTPM: 1248.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4055.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 3199.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2764.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 2734.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 2674.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 2590.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 2510.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 2502.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 2378.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 2319.0
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 2238.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 2194.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 2139.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 2100.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 2095.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 2062.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 2033.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 1983.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1960.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1952.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1941.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1930.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 1922.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 1921.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1879.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 1872.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1869.2
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 1866.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1861.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1858.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 1790.3
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 1785.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 1776.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 1760.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 1754.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1747.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1745.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 1743.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1738.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 1714.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 1713.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 1696.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 1696.6
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 1664.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 1656.4
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 1642.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 1635.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1632.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1632.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 1626.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 1619.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 1600.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 1598.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 1597.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1588.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 1587.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 1568.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 1564.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1551.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1547.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 1540.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 1525.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 1518.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1503.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 1500.9
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1481.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 1443.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1395.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1392.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 1388.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1383.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 1380.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 1366.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1361.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1357.5
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 1355.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 1349.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 1349.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1339.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1320.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1319.0
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 1314.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 1308.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1306.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 1291.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1291.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1271.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 1271.0
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1258.9
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 1256.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1252.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 1248.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1247.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1243.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 1238.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1235.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 1225.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 1218.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1213.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1210.7
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 1210.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1202.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1200.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1195.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1191.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1180.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 1171.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1167.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1157.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1154.3
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1151.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1144.6
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 1143.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1135.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1134.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1122.7
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1121.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1118.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1116.4
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 1105.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 1104.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 1101.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1100.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1095.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 1094.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1093.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1091.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1085.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1084.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1082.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1080.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1080.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1074.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1064.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1063.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1062.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1050.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1041.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1038.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1035.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1029.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1027.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1023.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 1021.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1017.3
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 996.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 991.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 984.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 980.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 975.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 966.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 946.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 938.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 937.6
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 932.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 926.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 924.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 920.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 896.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 888.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 866.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 841.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 833.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 833.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 831.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 830.1
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 821.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 819.2
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 817.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 814.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 810.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 805.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 804.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 787.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 786.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 766.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 762.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 748.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 739.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 729.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 709.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 614.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 608.7
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

557.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 557.8
FF:10158-103A5 76 years, female 557.8

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

931.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 931.2
Samples: 1

Max nTPM: 931.2
Min nTPM: 931.2
Sample A 931.2

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1581.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1581.5
Samples: 3

Max nTPM: 1836.8
Min nTPM: 1208.1
Sample A Female 1699.6
Sample B Female 1208.1
Sample C Male 1836.8

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