MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.9 nTPM
HPA Brain:74.0 nTPM
GTEx:23.9 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:27.2 nTPM
Mouse:39.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 74.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.0
2586 Male, age 75, left hemisphere 100.2
2219 Male, age 76, both hemispheres 81.5
2666 Male, age 74, left hemisphere 74.7
2828 Female, age 72, unknown 74.3
1827 Male, age 72, unknown 70.1
1833 Male, age 53, unknown 70.1
2019 Male, age 18, unknown 69.9
2411 Female, age 72, unknown 67.3
1870 Female, age 42, unknown 66.3
1830 Male, age 51, unknown 65.3
Dorsal raphe nucleus
nTPM: 63.8
2016 Female, age 72, unknown 65.4
2298 Female, age 72, unknown 64.2
1828 Male, age 53, unknown 63.6
2750 Male, age 76, both hemispheres 63.4
2047 Male, age 72, unknown 62.4
Inferior colliculus
nTPM: 64.4
2849 Male, age 72, unknown 66.6
2097 Female, age 72, unknown 64.8
1848 Female, age 42, unknown 63.5
1890 Male, age 53, unknown 62.5
Median raphe nucleus
nTPM: 58.3
2220 Male, age 76, midline 58.3
Periaquaductal grey, anterior
nTPM: 68.9
2502 Female, age 75, unknown 75.4
1795 Male, age 51, unknown 68.8
1947 Male, age 18, unknown 62.6
Periaquaductal grey, dorsal
nTPM: 59.6
2464 Female, age 72, unknown 66.1
1831 Male, age 72, unknown 62.1
1840 Male, age 53, unknown 58.1
2850 Male, age 76, both hemispheres 52.0
Periaquaductal grey, lateral
nTPM: 58.9
2053 Male, age 18, unknown 63.9
2272 Male, age 74, both hemispheres 56.9
2140 Male, age 76, both hemispheres 55.8
Pretectal area
nTPM: 67.1
2007 Male, age 72, unknown 76.5
1816 Male, age 51, unknown 75.1
1817 Female, age 42, unknown 74.4
1815 Male, age 53, unknown 73.3
1944 Female, age 72, unknown 69.0
2825 Male, age 18, unknown 67.5
2407 Male, age 75, both hemispheres 66.0
2224 Female, age 72, unknown 61.6
2667 Female, age 75, unknown 59.2
2316 Male, age 76, right hemisphere 58.7
2273 Male, age 74, both hemispheres 56.6
Red nucleus
nTPM: 71.7
2584 Male, age 75, left hemisphere 88.9
2588 Male, age 74, left hemisphere 82.3
2785 Male, age 18, unknown 74.2
1904 Male, age 53, unknown 73.8
2227 Male, age 72, unknown 73.6
1954 Female, age 42, unknown 70.4
2503 Female, age 72, unknown 69.0
2769 Male, age 72, unknown 68.3
1865 Male, age 51, unknown 67.6
2823 Male, age 76, right hemisphere 65.9
1821 Female, age 72, unknown 65.2
2725 Female, age 75, unknown 61.0
Substantia nigra
nTPM: 62.5
2665 Male, age 74, both hemispheres 78.4
2583 Male, age 75, right hemisphere 75.8
1889 Female, age 72, unknown 65.6
2590 Female, age 75, unknown 64.7
1851 Male, age 51, unknown 62.5
1941 Male, age 53, unknown 59.6
1916 Female, age 42, unknown 59.3
2699 Male, age 18, unknown 58.0
2409 Female, age 72, unknown 50.6
2241 Male, age 72, unknown 50.5
Superior colliculus
nTPM: 71.0
2664 Male, age 75, both hemispheres 82.7
2668 Female, age 75, unknown 81.0
2261 Male, age 18, unknown 75.9
1995 Male, age 72, unknown 75.3
2087 Female, age 72, unknown 73.7
1796 Male, age 53, unknown 68.7
1839 Male, age 51, unknown 68.5
1913 Female, age 42, unknown 65.5
2587 Male, age 74, left hemisphere 60.4
1895 Male, age 76, right hemisphere 58.1
Ventral tegmental area
nTPM: 66.8
1942 Male, age 51, unknown 71.7
2021 Male, age 53, unknown 69.1
2223 Female, age 72, unknown 68.3
1915 Female, age 42, unknown 64.9
2218 Male, age 76, both hemispheres 63.7
2410 Female, age 72, unknown 62.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.9
Samples: 183

Max nTPM: 37.0
Min nTPM: 12.3
Std nTPM: 3.7
Median nTPM: 24.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 37.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 35.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 35.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 34.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 31.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 31.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 30.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 30.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 30.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 29.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 29.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.1
FF:10158-103A5 76 years, female 55.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.0
Samples: 4

Max nTPM: 27.6
Min nTPM: 18.4
Sample A Female 27.6
Sample B Female 21.3
Sample C Male 24.7
Sample D Male 18.4
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 32.6
Min nTPM: 21.1
Sample A Female 23.3
Sample B Female 21.1
Sample C Male 32.6
Sample D Male 27.8
Periaqueductal gray
nTPM: 19.6
Samples: 3

Max nTPM: 22.5
Min nTPM: 16.5
Sample B Female 19.7
Sample C Male 22.5
Sample D Male 16.5
Superior colliculi
nTPM: 27.2
Samples: 4

Max nTPM: 29.1
Min nTPM: 25.5
Sample A Female 29.1
Sample B Female 25.5
Sample C Male 27.4
Sample D Male 26.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.8
Samples: 4

Max nTPM: 41.7
Min nTPM: 37.6
Sample A Male 41.7
Sample B Male 38.3
Sample C Female 37.6
Sample D Female 41.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo