On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
10.9
nTPM
HPA Brain:
12.7
nTPM
GTEx:
10.9
nTPM
FANTOM5:
25.0
Scaled Tags Per Million
Macaque:
7.1
nTPM
Mouse:
8.1
nTPM
Rat:
6.3
nTPM
Pig:
22.1
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
3108
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
4641
Spinal cord_04
3284
Spinal cord_05
2933
Spinal cord_06
4478
Spinal cord_07
2809
Spinal cord_08
2918
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.7
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 10.1
2819
Male, age 47, both hemispheres
11.7
2818
Female, age 79, both hemispheres
11.4
2734
Male, age 80, both hemispheres
9.0
2193
Male, age 75, both hemispheres
8.2
Cervical spinal cord, central gray nTPM: 12.7
2565
Male, age 75, midline
15.0
2048
Male, age 55, midline
13.0
1981
Female, age 72, midline
12.7
2816
Male, age 47, midline
11.5
2194
Female, age 79, both hemispheres
11.4
Cervical spinal cord, dorsal horn nTPM: 10.1
2173
Female, age 72, unknown
12.4
2721
Male, age 90, both hemispheres
12.4
2296
Male, age 66, both hemispheres
10.3
1877
Male, age 55, unknown
8.7
2069
Male, age 47, both hemispheres
8.7
2297
Male, age 75, both hemispheres
8.3
Cervical spinal cord, ventral horn nTPM: 12.6
2809
Male, age 90, both hemispheres
17.1
2098
Female, age 72, unknown
14.1
2820
Female, age 79, both hemispheres
11.7
2295
Male, age 66, both hemispheres
11.5
2068
Male, age 55, unknown
10.6
2480
Male, age 75, both hemispheres
10.5
Dorsal funiculus (white matter) nTPM: 11.0
2064
Female, age 79, both hemispheres
14.1
2817
Male, age 47, both hemispheres
11.7
2812
Male, age 66, both hemispheres
11.3
2128
Male, age 75, both hemispheres
10.0
2810
Male, age 90, both hemispheres
7.6
Lateral funiculus (white matter) nTPM: 8.1
2094
Female, age 79, both hemispheres
11.4
2294
Male, age 66, both hemispheres
7.8
2192
Male, age 75, both hemispheres
6.7
2099
Male, age 90, both hemispheres
6.4
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.9
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 10.9
Samples: 204
Max nTPM: 31.4
Min nTPM: 4.5
Std nTPM: 4.2
Median nTPM: 10.2
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
31.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
31.2
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
27.1
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
26.4
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
26.3
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
22.8
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
22.3
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
22.1
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
20.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
18.9
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
17.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
17.4
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
17.3
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
17.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
16.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
16.9
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
15.9
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
15.8
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
15.8
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
15.6
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
15.4
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
15.2
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
15.0
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
14.5
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
14.4
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
14.3
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
14.2
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
14.2
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
14.2
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
14.1
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
13.9
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
13.8
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
13.7
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
13.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
13.6
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
13.4
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
13.4
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
13.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
13.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
13.2
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
13.2
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
13.0
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
13.0
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
13.0
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
12.9
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
12.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
12.8
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
12.6
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
12.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
12.4
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
12.3
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
12.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
12.1
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
12.1
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
11.9
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
11.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
11.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
11.8
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
11.8
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
11.8
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
11.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
11.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
11.6
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
11.6
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
11.6
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
11.6
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
11.6
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
11.5
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
11.5
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
11.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
11.3
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
11.3
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
11.2
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
11.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
11.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
11.1
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
11.1
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
11.0
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
11.0
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
10.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
10.9
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
10.8
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
10.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
10.8
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
10.8
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
10.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
10.8
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
10.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
10.5
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
10.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
10.5
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
10.4
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
10.4
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
10.4
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
10.4
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
10.3
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
10.3
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
10.3
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
10.3
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
10.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
10.2
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
10.2
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
10.2
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
10.2
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
10.1
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
10.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
10.0
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
10.0
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
9.9
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
9.9
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
9.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
9.9
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
9.9
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
9.7
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
9.7
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
9.6
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
9.6
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
9.6
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
9.6
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
9.5
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
9.5
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
9.4
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
9.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
9.4
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
9.4
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
9.4
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
9.3
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
9.3
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
9.3
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
9.2
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
9.1
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
9.1
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
9.1
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
9.1
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
9.1
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
9.0
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
9.0
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
9.0
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
8.9
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
8.7
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
8.7
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
8.6
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
8.6
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
8.6
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
8.6
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
8.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
8.5
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
8.5
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
8.4
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
8.4
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
8.3
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
8.3
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
8.3
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
8.3
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
8.3
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
8.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
8.1
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
8.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
8.0
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
8.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
7.9
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
7.9
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
7.9
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
7.9
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
7.8
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
7.6
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
7.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
7.6
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
7.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
7.5
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
7.3
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
7.2
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
7.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
7.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
7.1
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
7.1
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
7.0
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
7.0
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
7.0
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
6.9
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
6.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
6.9
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
6.9
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
6.8
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
6.8
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
6.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
6.7
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
6.7
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
6.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
6.6
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
6.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
6.4
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
6.3
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
6.3
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
6.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
6.0
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
5.8
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
5.8
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
5.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
5.3
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
5.0
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
4.8
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
4.7
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
4.5
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7.1
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 4.1
Samples: 2
Max nTPM: 5.3
Min nTPM: 2.8
Sample A
2.8
Sample B
5.3
Ventral spinal cord nTPM: 7.1
Samples: 1
Max nTPM: 7.1
Min nTPM: 7.1
Sample A
7.1
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.1
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 20.2
Samples: 4
Max nTPM: 24.1
Min nTPM: 17.9
Sample A
Female
18.0
Sample B
Female
17.9
Sample C
Male
24.1
Sample D
Male
20.7
Ventral spinal cord nTPM: 22.1
Samples: 4
Max nTPM: 23.0
Min nTPM: 20.5
Sample A
Female
20.5
Sample B
Female
23.0
Sample C
Male
21.9
Sample D
Male
22.9
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.1
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 8.1
Samples: 4
Max nTPM: 8.6
Min nTPM: 7.0
Sample A
7.0
Sample B
8.6
Sample C
8.6
Sample D
8.1
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.3
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 6.4
Samples: 4
Max nTPM: 7.6
Min nTPM: 5.5
Sample A
5.7
Sample A
6.6
Sample A
5.5
Sample A
7.6
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The Human Protein Atlas project is funded
