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  • FKBP1A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:179.4 nTPM
HPA Brain:160.9 nTPM
GTEx:179.4 nTPM
FANTOM5:199.2 Scaled Tags Per Million
Mouse:581.8 nTPM
Allen mouse:21.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.9
Sample id Sample description nTPM
Amygdala
nTPM: 100.2
2517 Female, age 94, left hemisphere 135.4
1987 Female, age 91, left hemisphere 101.1
2814 Male, age 76, right hemisphere 95.0
2695 Female, age 67, right hemisphere 85.5
2514 Male, age 75, right hemisphere 84.1
Basal amygdala
nTPM: 157.6
2110 Male, age 80, left hemisphere 211.8
2685 Female, age 94, left hemisphere 198.6
2243 Female, age 91, right hemisphere 174.4
1955 Male, age 76, both hemispheres 146.5
2827 Female, age 67, right hemisphere 111.5
2609 Male, age 75, right hemisphere 103.0
Central amygdala
nTPM: 114.4
2826 Female, age 94, left hemisphere 157.9
2239 Male, age 80, left hemisphere 145.9
2515 Male, age 75, right hemisphere 98.0
2701 Female, age 91, right hemisphere 86.2
1905 Male, age 76, both hemispheres 84.2
Corticomedial amygdala
nTPM: 160.9
2829 Male, age 80, left hemisphere 231.3
2242 Female, age 91, right hemisphere 191.9
2240 Male, age 76, both hemispheres 152.2
2535 Female, age 67, right hemisphere 145.3
2429 Female, age 94, left hemisphere 139.7
2428 Male, age 75, right hemisphere 105.1
Lateral amygdala
nTPM: 113.6
2534 Female, age 94, left hemisphere 165.1
1883 Male, age 76, both hemispheres 125.3
2256 Male, age 80, left hemisphere 120.7
2255 Female, age 91, right hemisphere 100.9
2516 Male, age 75, right hemisphere 88.3
2830 Female, age 67, right hemisphere 81.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 179.4
Samples: 181

Max nTPM: 600.9
Min nTPM: 44.5
Std nTPM: 98.5
Median nTPM: 153.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 600.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 505.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 476.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 472.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 424.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 419.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 416.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 404.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 381.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 378.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 374.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 352.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 349.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 347.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 333.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 326.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 321.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 315.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 310.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 309.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 303.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 300.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 299.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 291.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 288.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 279.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 274.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 274.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 271.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 267.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 267.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 261.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 260.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 260.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 259.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 255.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 254.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 251.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 247.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 246.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 245.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 243.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 240.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 238.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 236.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 232.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 231.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 216.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 214.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 212.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 211.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 210.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 208.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 206.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 204.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 202.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 202.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 198.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 195.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 189.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 189.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 188.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 188.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 188.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 188.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 187.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 183.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 182.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 182.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 181.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 179.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 178.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 174.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 174.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 173.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 172.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 169.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 169.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 169.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 168.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 164.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 163.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 163.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 162.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 160.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 160.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 157.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 156.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 156.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 155.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 153.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 151.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 150.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 149.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 148.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 147.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 146.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 145.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 144.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 141.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 139.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 139.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 137.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 135.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 135.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 135.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 134.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 134.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 133.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 133.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 133.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 131.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 130.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 129.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 128.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 123.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 122.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 121.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 121.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 120.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 120.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 120.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 116.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 116.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 114.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 112.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 112.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 111.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 110.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 110.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 109.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 109.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 108.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 108.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 105.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 104.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 103.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 103.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 103.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 102.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 101.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 101.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 100.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 100.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 100.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 99.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 95.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 95.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 95.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 94.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 94.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 93.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 93.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 92.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 91.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 89.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 89.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 88.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 88.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 88.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 87.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 86.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 85.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 85.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 82.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 82.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 81.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 79.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 78.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 75.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 74.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 73.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 70.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 70.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 70.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 65.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 63.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 61.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 54.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 47.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 44.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

199.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 199.2
FF:10151-102I7 76 years, female 199.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

581.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 581.8
Samples: 4

Max nTPM: 603.8
Min nTPM: 570.2
Sample A Male 576.4
Sample B Male 603.8
Sample C Female 570.2
Sample D Female 576.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.8
68269071 Antisense, RP_041208_01_H10, Mouse strain C57BL/6J (56 days, male) 21.8

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