A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
31.0
nTPM
Monaco:
120.6
nTPM
Schmiedel:
123.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.0
HPA sample
nTPM
Memory B-cell nTPM: 30.6
Samples: 6
Max nTPM: 34.6
Min nTPM: 21.4
P10809_1017
33.5
P10809_1025
34.5
P10809_1044
21.4
P10809_1063
29.5
P10809_1092
34.6
P10809_1105
30.3
Naive B-cell nTPM: 31.0
Samples: 6
Max nTPM: 57.2
Min nTPM: 22.1
P10809_1011
22.6
P10809_1029
26.7
P10809_1048
57.2
P10809_1067
22.1
P10809_1091
28.3
P10809_1104
29.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 107.4
Samples: 4
Max nTPM: 124.6
Min nTPM: 80.0
RHH5310_R3677
119.6
RHH5218_R3590
124.6
RHH5247_R3619
80.0
RHH5276_R3648
105.2
Naive B-cell nTPM: 90.4
Samples: 4
Max nTPM: 103.3
Min nTPM: 73.8
RHH5308_R3675
73.8
RHH5216_R3588
90.4
RHH5245_R3617
103.3
RHH5274_R3646
94.0
Non-switched memory B-cell nTPM: 83.8
Samples: 4
Max nTPM: 99.2
Min nTPM: 73.6
RHH5309_R3676
88.0
RHH5217_R3589
99.2
RHH5246_R3618
74.4
RHH5275_R3647
73.6
Plasmablast nTPM: 120.6
Samples: 4
Max nTPM: 137.4
Min nTPM: 107.6
RHH5312_R3679
127.5
RHH5220_R3592
137.4
RHH5249_R3621
107.6
RHH5278_R3650
110.0
Switched memory B-cell nTPM: 102.3
Samples: 4
Max nTPM: 107.7
Min nTPM: 88.7
RHH5311_R3678
106.2
RHH5219_R3591
106.4
RHH5248_R3620
107.7
RHH5277_R3649
88.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.0
Schmiedel sample id
TPM
Naive B-cell TPM: 123.0
Samples: 91
Max TPM: 170.8
Min TPM: 88.8
B_CELL_NAIVE_1
170.8
B_CELL_NAIVE_2
170.0
B_CELL_NAIVE_3
162.5
B_CELL_NAIVE_4
155.6
B_CELL_NAIVE_5
151.0
B_CELL_NAIVE_6
146.5
B_CELL_NAIVE_7
145.9
B_CELL_NAIVE_8
142.5
B_CELL_NAIVE_9
140.0
B_CELL_NAIVE_10
140.0
B_CELL_NAIVE_11
139.4
B_CELL_NAIVE_12
137.1
B_CELL_NAIVE_13
135.7
B_CELL_NAIVE_14
135.7
B_CELL_NAIVE_15
134.9
B_CELL_NAIVE_16
134.9
B_CELL_NAIVE_17
134.6
B_CELL_NAIVE_18
134.0
B_CELL_NAIVE_19
133.4
B_CELL_NAIVE_20
132.7
B_CELL_NAIVE_21
132.3
B_CELL_NAIVE_22
131.9
B_CELL_NAIVE_23
131.2
B_CELL_NAIVE_24
130.6
B_CELL_NAIVE_25
130.0
B_CELL_NAIVE_26
129.8
B_CELL_NAIVE_27
128.1
B_CELL_NAIVE_28
127.3
B_CELL_NAIVE_29
127.1
B_CELL_NAIVE_30
126.9
B_CELL_NAIVE_31
126.2
B_CELL_NAIVE_32
126.1
B_CELL_NAIVE_33
125.3
B_CELL_NAIVE_34
125.3
B_CELL_NAIVE_35
124.6
B_CELL_NAIVE_36
124.4
B_CELL_NAIVE_37
123.0
B_CELL_NAIVE_38
122.9
B_CELL_NAIVE_39
122.8
B_CELL_NAIVE_40
122.7
B_CELL_NAIVE_41
122.5
B_CELL_NAIVE_42
122.1
B_CELL_NAIVE_43
122.0
B_CELL_NAIVE_44
121.9
B_CELL_NAIVE_45
121.5
B_CELL_NAIVE_46
121.3
B_CELL_NAIVE_47
120.9
B_CELL_NAIVE_48
120.1
B_CELL_NAIVE_49
120.1
B_CELL_NAIVE_50
119.9
B_CELL_NAIVE_51
119.5
B_CELL_NAIVE_52
118.6
B_CELL_NAIVE_53
118.4
B_CELL_NAIVE_54
118.3
B_CELL_NAIVE_55
118.1
B_CELL_NAIVE_56
117.7
B_CELL_NAIVE_57
117.3
B_CELL_NAIVE_58
117.3
B_CELL_NAIVE_59
116.5
B_CELL_NAIVE_60
116.3
B_CELL_NAIVE_61
116.2
B_CELL_NAIVE_62
115.9
B_CELL_NAIVE_63
115.7
B_CELL_NAIVE_64
115.6
B_CELL_NAIVE_65
115.5
B_CELL_NAIVE_66
114.9
B_CELL_NAIVE_67
114.8
B_CELL_NAIVE_68
114.6
B_CELL_NAIVE_69
114.5
B_CELL_NAIVE_70
114.1
B_CELL_NAIVE_71
114.0
B_CELL_NAIVE_72
113.7
B_CELL_NAIVE_73
113.6
B_CELL_NAIVE_74
112.8
B_CELL_NAIVE_75
111.5
B_CELL_NAIVE_76
110.4
B_CELL_NAIVE_77
109.5
B_CELL_NAIVE_78
109.2
B_CELL_NAIVE_79
109.0
B_CELL_NAIVE_80
108.7
B_CELL_NAIVE_81
108.0
B_CELL_NAIVE_82
107.2
B_CELL_NAIVE_83
107.0
B_CELL_NAIVE_84
104.3
B_CELL_NAIVE_85
103.3
B_CELL_NAIVE_86
103.2
B_CELL_NAIVE_87
102.6
B_CELL_NAIVE_88
101.0
B_CELL_NAIVE_89
100.9
B_CELL_NAIVE_90
99.9
B_CELL_NAIVE_91
88.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.