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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • IMMUNE

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  • XRN2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:31.0 nTPM
Monaco:120.6 nTPM
Schmiedel:123.0 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

31.0
HPA sample nTPM
Memory B-cell
nTPM: 30.6
Samples: 6

Max nTPM: 34.6
Min nTPM: 21.4
P10809_1017 33.5
P10809_1025 34.5
P10809_1044 21.4
P10809_1063 29.5
P10809_1092 34.6
P10809_1105 30.3
Naive B-cell
nTPM: 31.0
Samples: 6

Max nTPM: 57.2
Min nTPM: 22.1
P10809_1011 22.6
P10809_1029 26.7
P10809_1048 57.2
P10809_1067 22.1
P10809_1091 28.3
P10809_1104 29.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

120.6
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 107.4
Samples: 4

Max nTPM: 124.6
Min nTPM: 80.0
RHH5310_R3677 119.6
RHH5218_R3590 124.6
RHH5247_R3619 80.0
RHH5276_R3648 105.2
Naive B-cell
nTPM: 90.4
Samples: 4

Max nTPM: 103.3
Min nTPM: 73.8
RHH5308_R3675 73.8
RHH5216_R3588 90.4
RHH5245_R3617 103.3
RHH5274_R3646 94.0
Non-switched memory B-cell
nTPM: 83.8
Samples: 4

Max nTPM: 99.2
Min nTPM: 73.6
RHH5309_R3676 88.0
RHH5217_R3589 99.2
RHH5246_R3618 74.4
RHH5275_R3647 73.6
Plasmablast
nTPM: 120.6
Samples: 4

Max nTPM: 137.4
Min nTPM: 107.6
RHH5312_R3679 127.5
RHH5220_R3592 137.4
RHH5249_R3621 107.6
RHH5278_R3650 110.0
Switched memory B-cell
nTPM: 102.3
Samples: 4

Max nTPM: 107.7
Min nTPM: 88.7
RHH5311_R3678 106.2
RHH5219_R3591 106.4
RHH5248_R3620 107.7
RHH5277_R3649 88.7

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

123.0
Schmiedel sample id TPM
Naive B-cell
TPM: 123.0
Samples: 91

Max TPM: 170.8
Min TPM: 88.8
B_CELL_NAIVE_1 170.8
B_CELL_NAIVE_2 170.0
B_CELL_NAIVE_3 162.5
B_CELL_NAIVE_4 155.6
B_CELL_NAIVE_5 151.0
B_CELL_NAIVE_6 146.5
B_CELL_NAIVE_7 145.9
B_CELL_NAIVE_8 142.5
B_CELL_NAIVE_9 140.0
B_CELL_NAIVE_10 140.0
B_CELL_NAIVE_11 139.4
B_CELL_NAIVE_12 137.1
B_CELL_NAIVE_13 135.7
B_CELL_NAIVE_14 135.7
B_CELL_NAIVE_15 134.9
B_CELL_NAIVE_16 134.9
B_CELL_NAIVE_17 134.6
B_CELL_NAIVE_18 134.0
B_CELL_NAIVE_19 133.4
B_CELL_NAIVE_20 132.7
B_CELL_NAIVE_21 132.3
B_CELL_NAIVE_22 131.9
B_CELL_NAIVE_23 131.2
B_CELL_NAIVE_24 130.6
B_CELL_NAIVE_25 130.0
B_CELL_NAIVE_26 129.8
B_CELL_NAIVE_27 128.1
B_CELL_NAIVE_28 127.3
B_CELL_NAIVE_29 127.1
B_CELL_NAIVE_30 126.9
B_CELL_NAIVE_31 126.2
B_CELL_NAIVE_32 126.1
B_CELL_NAIVE_33 125.3
B_CELL_NAIVE_34 125.3
B_CELL_NAIVE_35 124.6
B_CELL_NAIVE_36 124.4
B_CELL_NAIVE_37 123.0
B_CELL_NAIVE_38 122.9
B_CELL_NAIVE_39 122.8
B_CELL_NAIVE_40 122.7
B_CELL_NAIVE_41 122.5
B_CELL_NAIVE_42 122.1
B_CELL_NAIVE_43 122.0
B_CELL_NAIVE_44 121.9
B_CELL_NAIVE_45 121.5
B_CELL_NAIVE_46 121.3
B_CELL_NAIVE_47 120.9
B_CELL_NAIVE_48 120.1
B_CELL_NAIVE_49 120.1
B_CELL_NAIVE_50 119.9
B_CELL_NAIVE_51 119.5
B_CELL_NAIVE_52 118.6
B_CELL_NAIVE_53 118.4
B_CELL_NAIVE_54 118.3
B_CELL_NAIVE_55 118.1
B_CELL_NAIVE_56 117.7
B_CELL_NAIVE_57 117.3
B_CELL_NAIVE_58 117.3
B_CELL_NAIVE_59 116.5
B_CELL_NAIVE_60 116.3
B_CELL_NAIVE_61 116.2
B_CELL_NAIVE_62 115.9
B_CELL_NAIVE_63 115.7
B_CELL_NAIVE_64 115.6
B_CELL_NAIVE_65 115.5
B_CELL_NAIVE_66 114.9
B_CELL_NAIVE_67 114.8
B_CELL_NAIVE_68 114.6
B_CELL_NAIVE_69 114.5
B_CELL_NAIVE_70 114.1
B_CELL_NAIVE_71 114.0
B_CELL_NAIVE_72 113.7
B_CELL_NAIVE_73 113.6
B_CELL_NAIVE_74 112.8
B_CELL_NAIVE_75 111.5
B_CELL_NAIVE_76 110.4
B_CELL_NAIVE_77 109.5
B_CELL_NAIVE_78 109.2
B_CELL_NAIVE_79 109.0
B_CELL_NAIVE_80 108.7
B_CELL_NAIVE_81 108.0
B_CELL_NAIVE_82 107.2
B_CELL_NAIVE_83 107.0
B_CELL_NAIVE_84 104.3
B_CELL_NAIVE_85 103.3
B_CELL_NAIVE_86 103.2
B_CELL_NAIVE_87 102.6
B_CELL_NAIVE_88 101.0
B_CELL_NAIVE_89 100.9
B_CELL_NAIVE_90 99.9
B_CELL_NAIVE_91 88.8
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