A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
72.3
nTPM
Monaco:
243.1
nTPM
Schmiedel:
225.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.3
HPA sample
nTPM
Classical monocyte nTPM: 68.6
Samples: 6
Max nTPM: 83.9
Min nTPM: 54.4
P10809_1003
83.9
P10809_1020
75.4
P10809_1039
74.4
P10809_1058
59.7
P10809_1080
63.8
P10809_1107
54.4
Intermediate monocyte nTPM: 54.8
Samples: 6
Max nTPM: 66.9
Min nTPM: 39.1
P10809_1004
47.8
P10809_1023
65.4
P10809_1042
61.2
P10809_1061
66.9
P10809_1081
48.2
P10809_1108
39.1
Non-classical monocyte nTPM: 72.2
Samples: 5
Max nTPM: 160.8
Min nTPM: 42.4
P10809_1005
56.8
P10809_1053
57.5
P10809_1072
160.8
P10809_1082
43.7
P10809_1109
42.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
243.1
Monaco sample
nTPM
Classical monocyte nTPM: 243.1
Samples: 4
Max nTPM: 267.4
Min nTPM: 225.1
RHH5313_R3680
225.1
RHH5221_R3593
238.2
RHH5250_R3622
267.4
RHH5279_R3651
241.6
Intermediate monocyte nTPM: 182.2
Samples: 4
Max nTPM: 211.7
Min nTPM: 161.8
RHH5314_R3681
163.3
RHH5222_R3594
211.7
RHH5251_R3623
161.8
RHH5280_R3652
192.0
Non-classical monocyte nTPM: 169.4
Samples: 4
Max nTPM: 223.4
Min nTPM: 142.4
RHH5315_R3682
142.4
RHH5223_R3595
223.4
RHH5252_R3624
160.9
RHH5281_R3653
151.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
225.8
Schmiedel sample id
TPM
Classical monocyte TPM: 225.8
Samples: 91
Max TPM: 282.4
Min TPM: 170.8
MONOCYTES_1
282.4
MONOCYTES_2
281.5
MONOCYTES_3
279.8
MONOCYTES_4
277.6
MONOCYTES_5
270.6
MONOCYTES_6
270.4
MONOCYTES_7
269.3
MONOCYTES_8
265.1
MONOCYTES_9
262.5
MONOCYTES_10
257.6
MONOCYTES_11
255.0
MONOCYTES_12
253.7
MONOCYTES_13
253.6
MONOCYTES_14
253.1
MONOCYTES_15
251.3
MONOCYTES_16
249.5
MONOCYTES_17
248.0
MONOCYTES_18
247.4
MONOCYTES_19
247.3
MONOCYTES_20
246.3
MONOCYTES_21
245.8
MONOCYTES_22
245.7
MONOCYTES_23
242.6
MONOCYTES_24
242.5
MONOCYTES_25
240.3
MONOCYTES_26
240.2
MONOCYTES_27
239.8
MONOCYTES_28
239.7
MONOCYTES_29
239.5
MONOCYTES_30
239.2
MONOCYTES_31
238.8
MONOCYTES_32
238.4
MONOCYTES_33
237.2
MONOCYTES_34
236.8
MONOCYTES_35
236.7
MONOCYTES_36
236.6
MONOCYTES_37
236.0
MONOCYTES_38
234.4
MONOCYTES_39
234.2
MONOCYTES_40
233.0
MONOCYTES_41
232.4
MONOCYTES_42
232.2
MONOCYTES_43
230.0
MONOCYTES_44
228.8
MONOCYTES_45
224.8
MONOCYTES_46
224.0
MONOCYTES_47
223.5
MONOCYTES_48
223.3
MONOCYTES_49
221.7
MONOCYTES_50
221.4
MONOCYTES_51
220.8
MONOCYTES_52
220.5
MONOCYTES_53
219.6
MONOCYTES_54
218.2
MONOCYTES_55
216.4
MONOCYTES_56
215.8
MONOCYTES_57
214.0
MONOCYTES_58
214.0
MONOCYTES_59
212.5
MONOCYTES_60
210.9
MONOCYTES_61
210.5
MONOCYTES_62
210.4
MONOCYTES_63
209.6
MONOCYTES_64
209.5
MONOCYTES_65
209.2
MONOCYTES_66
207.7
MONOCYTES_67
207.7
MONOCYTES_68
207.6
MONOCYTES_69
207.2
MONOCYTES_70
207.0
MONOCYTES_71
206.4
MONOCYTES_72
204.5
MONOCYTES_73
203.9
MONOCYTES_74
203.1
MONOCYTES_75
203.1
MONOCYTES_76
199.3
MONOCYTES_77
198.2
MONOCYTES_78
194.6
MONOCYTES_79
194.3
MONOCYTES_80
193.5
MONOCYTES_81
193.0
MONOCYTES_82
193.0
MONOCYTES_83
192.8
MONOCYTES_84
190.5
MONOCYTES_85
190.1
MONOCYTES_86
188.6
MONOCYTES_87
188.0
MONOCYTES_88
182.8
MONOCYTES_89
178.3
MONOCYTES_90
171.4
MONOCYTES_91
170.8
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Non-classical monocyte TPM: 214.1
Samples: 90
Max TPM: 293.4
Min TPM: 165.8
M2_1
293.4
M2_2
284.3
M2_3
265.3
M2_4
262.1
M2_5
261.9
M2_6
260.0
M2_7
259.0
M2_8
257.6
M2_9
252.3
M2_10
250.7
M2_11
249.2
M2_12
247.5
M2_13
247.3
M2_14
246.8
M2_15
246.7
M2_16
240.6
M2_17
237.9
M2_18
236.2
M2_19
235.0
M2_20
231.9
M2_21
231.1
M2_22
230.1
M2_23
229.9
M2_24
229.0
M2_25
228.8
M2_26
226.5
M2_27
226.0
M2_28
224.2
M2_29
223.9
M2_30
222.5
M2_31
220.9
M2_32
220.6
M2_33
220.2
M2_34
219.2
M2_35
216.3
M2_36
216.2
M2_37
213.6
M2_38
213.5
M2_39
213.5
M2_40
209.7
M2_41
209.5
M2_42
209.5
M2_43
208.6
M2_44
207.1
M2_45
207.1
M2_46
206.9
M2_47
206.5
M2_48
206.4
M2_49
205.8
M2_50
205.7
M2_51
205.6
M2_52
205.1
M2_53
204.4
M2_54
204.2
M2_55
203.9
M2_56
203.5
M2_57
203.1
M2_58
201.2
M2_59
201.0
M2_60
200.7
M2_61
200.6
M2_62
198.7
M2_63
198.4
M2_64
197.6
M2_65
196.7
M2_66
196.7
M2_67
196.0
M2_68
195.8
M2_69
194.2
M2_70
193.8
M2_71
193.7
M2_72
193.0
M2_73
192.2
M2_74
192.0
M2_75
191.3
M2_76
189.8
M2_77
189.6
M2_78
188.7
M2_79
188.4
M2_80
186.8
M2_81
184.4
M2_82
184.4
M2_83
184.3
M2_84
183.5
M2_85
183.1
M2_86
182.3
M2_87
176.2
M2_88
175.0
M2_89
168.6
M2_90
165.8
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