A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
283.7
nTPM
Monaco:
87.9
nTPM
Schmiedel:
70.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
283.7
HPA sample
nTPM
NK-cell nTPM: 283.7
Samples: 6
Max nTPM: 334.9
Min nTPM: 237.0
P10809_1013
237.0
P10809_1033
334.9
P10809_1052
312.3
P10809_1071
300.9
P10809_1093
242.8
P10809_1103
274.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.9
Monaco sample
nTPM
NK-cell nTPM: 87.9
Samples: 4
Max nTPM: 99.6
Min nTPM: 58.7
RHH5316_R3683
94.8
RHH5224_R3596
99.6
RHH5253_R3625
58.7
RHH5282_R3654
98.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.8
Schmiedel sample id
TPM
NK-cell TPM: 70.8
Samples: 90
Max TPM: 97.9
Min TPM: 46.2
NK_1
97.9
NK_2
93.9
NK_3
90.5
NK_4
90.4
NK_5
89.7
NK_6
88.5
NK_7
87.3
NK_8
87.0
NK_9
85.8
NK_10
85.6
NK_11
85.2
NK_12
85.1
NK_13
84.7
NK_14
83.3
NK_15
83.2
NK_16
82.2
NK_17
81.6
NK_18
81.6
NK_19
81.4
NK_20
80.0
NK_21
79.5
NK_22
79.4
NK_23
78.4
NK_24
77.7
NK_25
76.7
NK_26
76.1
NK_27
76.1
NK_28
75.8
NK_29
75.4
NK_30
75.2
NK_31
75.2
NK_32
75.1
NK_33
75.0
NK_34
74.9
NK_35
74.8
NK_36
72.1
NK_37
72.0
NK_38
71.1
NK_39
71.0
NK_40
70.6
NK_41
70.4
NK_42
70.4
NK_43
70.3
NK_44
70.2
NK_45
70.2
NK_46
69.2
NK_47
68.9
NK_48
67.8
NK_49
67.6
NK_50
67.4
NK_51
67.2
NK_52
66.8
NK_53
66.7
NK_54
66.7
NK_55
66.7
NK_56
66.7
NK_57
66.6
NK_58
66.5
NK_59
66.4
NK_60
66.1
NK_61
65.7
NK_62
65.7
NK_63
65.2
NK_64
64.9
NK_65
64.8
NK_66
64.7
NK_67
64.1
NK_68
63.0
NK_69
62.9
NK_70
62.2
NK_71
62.0
NK_72
61.6
NK_73
61.6
NK_74
60.7
NK_75
60.5
NK_76
60.4
NK_77
60.1
NK_78
60.1
NK_79
60.0
NK_80
59.4
NK_81
56.8
NK_82
56.7
NK_83
54.9
NK_84
54.7
NK_85
54.1
NK_86
53.8
NK_87
53.5
NK_88
52.4
NK_89
52.0
NK_90
46.2
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