A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
336.6
nTPM
Monaco:
143.3
nTPM
Schmiedel:
64.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
336.6
HPA sample
nTPM
Classical monocyte nTPM: 292.8
Samples: 6
Max nTPM: 419.3
Min nTPM: 231.5
P10809_1003
419.3
P10809_1020
298.8
P10809_1039
277.5
P10809_1058
238.9
P10809_1080
231.5
P10809_1107
290.7
Intermediate monocyte nTPM: 303.9
Samples: 6
Max nTPM: 372.2
Min nTPM: 212.7
P10809_1004
288.8
P10809_1023
372.2
P10809_1042
324.9
P10809_1061
212.7
P10809_1081
277.1
P10809_1108
347.6
Non-classical monocyte nTPM: 336.6
Samples: 5
Max nTPM: 415.9
Min nTPM: 299.2
P10809_1005
415.9
P10809_1053
312.6
P10809_1072
301.2
P10809_1082
299.2
P10809_1109
354.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
143.3
Monaco sample
nTPM
Classical monocyte nTPM: 110.9
Samples: 4
Max nTPM: 137.6
Min nTPM: 88.2
RHH5313_R3680
137.6
RHH5221_R3593
97.5
RHH5250_R3622
88.2
RHH5279_R3651
120.4
Intermediate monocyte nTPM: 143.4
Samples: 4
Max nTPM: 151.9
Min nTPM: 129.0
RHH5314_R3681
151.9
RHH5222_R3594
142.5
RHH5251_R3623
129.0
RHH5280_R3652
150.0
Non-classical monocyte nTPM: 105.1
Samples: 4
Max nTPM: 109.6
Min nTPM: 99.6
RHH5315_R3682
109.6
RHH5223_R3595
106.2
RHH5252_R3624
104.8
RHH5281_R3653
99.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.3
Schmiedel sample id
TPM
Classical monocyte TPM: 58.7
Samples: 91
Max TPM: 82.1
Min TPM: 33.1
MONOCYTES_1
82.1
MONOCYTES_2
79.8
MONOCYTES_3
78.9
MONOCYTES_4
77.5
MONOCYTES_5
76.6
MONOCYTES_6
76.5
MONOCYTES_7
76.0
MONOCYTES_8
75.8
MONOCYTES_9
75.7
MONOCYTES_10
75.3
MONOCYTES_11
74.8
MONOCYTES_12
73.0
MONOCYTES_13
72.7
MONOCYTES_14
70.8
MONOCYTES_15
70.2
MONOCYTES_16
70.0
MONOCYTES_17
69.9
MONOCYTES_18
69.7
MONOCYTES_19
68.8
MONOCYTES_20
67.5
MONOCYTES_21
67.0
MONOCYTES_22
66.5
MONOCYTES_23
66.2
MONOCYTES_24
66.1
MONOCYTES_25
65.9
MONOCYTES_26
65.5
MONOCYTES_27
65.5
MONOCYTES_28
65.1
MONOCYTES_29
64.9
MONOCYTES_30
64.8
MONOCYTES_31
64.5
MONOCYTES_32
64.3
MONOCYTES_33
63.9
MONOCYTES_34
63.3
MONOCYTES_35
62.9
MONOCYTES_36
62.8
MONOCYTES_37
62.7
MONOCYTES_38
62.5
MONOCYTES_39
62.3
MONOCYTES_40
62.0
MONOCYTES_41
61.9
MONOCYTES_42
60.9
MONOCYTES_43
60.9
MONOCYTES_44
60.6
MONOCYTES_45
60.6
MONOCYTES_46
60.2
MONOCYTES_47
59.0
MONOCYTES_48
58.5
MONOCYTES_49
58.4
MONOCYTES_50
58.0
MONOCYTES_51
57.8
MONOCYTES_52
57.5
MONOCYTES_53
56.4
MONOCYTES_54
55.8
MONOCYTES_55
55.7
MONOCYTES_56
54.9
MONOCYTES_57
54.1
MONOCYTES_58
53.6
MONOCYTES_59
53.1
MONOCYTES_60
52.9
MONOCYTES_61
52.8
MONOCYTES_62
52.8
MONOCYTES_63
52.4
MONOCYTES_64
52.3
MONOCYTES_65
52.3
MONOCYTES_66
51.8
MONOCYTES_67
51.1
MONOCYTES_68
50.7
MONOCYTES_69
50.3
MONOCYTES_70
50.2
MONOCYTES_71
49.9
MONOCYTES_72
49.5
MONOCYTES_73
49.3
MONOCYTES_74
47.6
MONOCYTES_75
47.3
MONOCYTES_76
47.1
MONOCYTES_77
47.0
MONOCYTES_78
46.2
MONOCYTES_79
46.0
MONOCYTES_80
44.2
MONOCYTES_81
43.1
MONOCYTES_82
42.9
MONOCYTES_83
42.9
MONOCYTES_84
41.5
MONOCYTES_85
41.0
MONOCYTES_86
40.4
MONOCYTES_87
40.0
MONOCYTES_88
37.3
MONOCYTES_89
36.1
MONOCYTES_90
36.0
MONOCYTES_91
33.1
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Non-classical monocyte TPM: 64.3
Samples: 90
Max TPM: 87.0
Min TPM: 34.8
M2_1
87.0
M2_2
85.4
M2_3
83.5
M2_4
81.5
M2_5
80.8
M2_6
80.4
M2_7
79.9
M2_8
79.4
M2_9
79.4
M2_10
79.1
M2_11
78.1
M2_12
78.1
M2_13
77.8
M2_14
77.6
M2_15
76.3
M2_16
76.2
M2_17
76.2
M2_18
75.4
M2_19
74.3
M2_20
74.0
M2_21
73.7
M2_22
72.7
M2_23
72.6
M2_24
72.4
M2_25
72.3
M2_26
72.3
M2_27
72.2
M2_28
71.8
M2_29
70.8
M2_30
70.7
M2_31
69.3
M2_32
69.1
M2_33
68.9
M2_34
68.9
M2_35
68.9
M2_36
68.2
M2_37
67.8
M2_38
67.0
M2_39
66.8
M2_40
66.6
M2_41
66.5
M2_42
66.0
M2_43
65.8
M2_44
65.5
M2_45
65.5
M2_46
65.3
M2_47
64.1
M2_48
63.9
M2_49
63.9
M2_50
63.9
M2_51
63.0
M2_52
63.0
M2_53
62.4
M2_54
62.3
M2_55
62.1
M2_56
61.7
M2_57
61.0
M2_58
60.9
M2_59
60.8
M2_60
59.9
M2_61
59.8
M2_62
58.6
M2_63
58.3
M2_64
57.8
M2_65
56.9
M2_66
56.6
M2_67
55.5
M2_68
55.2
M2_69
54.8
M2_70
53.9
M2_71
53.9
M2_72
53.6
M2_73
53.0
M2_74
52.7
M2_75
52.6
M2_76
52.5
M2_77
52.2
M2_78
51.0
M2_79
50.9
M2_80
50.3
M2_81
49.0
M2_82
48.6
M2_83
47.2
M2_84
47.0
M2_85
46.8
M2_86
43.9
M2_87
43.6
M2_88
43.1
M2_89
39.4
M2_90
34.8
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