A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
80.9
nTPM
Monaco:
166.5
nTPM
Schmiedel:
96.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.9
HPA sample
nTPM
Memory B-cell nTPM: 80.9
Samples: 6
Max nTPM: 107.4
Min nTPM: 66.2
P10809_1017
68.6
P10809_1025
85.3
P10809_1044
107.4
P10809_1063
66.2
P10809_1092
89.7
P10809_1105
68.4
Naive B-cell nTPM: 75.5
Samples: 6
Max nTPM: 124.4
Min nTPM: 50.4
P10809_1011
50.4
P10809_1029
75.8
P10809_1048
124.4
P10809_1067
55.1
P10809_1091
76.8
P10809_1104
70.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
166.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 99.3
Samples: 4
Max nTPM: 113.5
Min nTPM: 71.6
RHH5310_R3677
113.5
RHH5218_R3590
105.1
RHH5247_R3619
71.6
RHH5276_R3648
107.0
Naive B-cell nTPM: 127.2
Samples: 4
Max nTPM: 161.0
Min nTPM: 96.7
RHH5308_R3675
133.1
RHH5216_R3588
161.0
RHH5245_R3617
96.7
RHH5274_R3646
117.9
Non-switched memory B-cell nTPM: 110.4
Samples: 4
Max nTPM: 137.7
Min nTPM: 80.8
RHH5309_R3676
119.7
RHH5217_R3589
137.7
RHH5246_R3618
80.8
RHH5275_R3647
103.2
Plasmablast nTPM: 166.5
Samples: 4
Max nTPM: 238.2
Min nTPM: 128.5
RHH5312_R3679
135.0
RHH5220_R3592
238.2
RHH5249_R3621
128.5
RHH5278_R3650
164.2
Switched memory B-cell nTPM: 89.9
Samples: 4
Max nTPM: 111.0
Min nTPM: 72.0
RHH5311_R3678
97.4
RHH5219_R3591
111.0
RHH5248_R3620
79.0
RHH5277_R3649
72.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.2
Schmiedel sample id
TPM
Naive B-cell TPM: 96.2
Samples: 91
Max TPM: 141.7
Min TPM: 59.3
B_CELL_NAIVE_1
141.7
B_CELL_NAIVE_2
140.4
B_CELL_NAIVE_3
136.8
B_CELL_NAIVE_4
135.2
B_CELL_NAIVE_5
132.3
B_CELL_NAIVE_6
128.2
B_CELL_NAIVE_7
126.0
B_CELL_NAIVE_8
125.9
B_CELL_NAIVE_9
118.8
B_CELL_NAIVE_10
116.7
B_CELL_NAIVE_11
116.3
B_CELL_NAIVE_12
114.7
B_CELL_NAIVE_13
113.8
B_CELL_NAIVE_14
111.3
B_CELL_NAIVE_15
110.2
B_CELL_NAIVE_16
109.7
B_CELL_NAIVE_17
108.8
B_CELL_NAIVE_18
107.9
B_CELL_NAIVE_19
106.5
B_CELL_NAIVE_20
106.4
B_CELL_NAIVE_21
104.8
B_CELL_NAIVE_22
104.2
B_CELL_NAIVE_23
104.2
B_CELL_NAIVE_24
103.1
B_CELL_NAIVE_25
102.0
B_CELL_NAIVE_26
101.4
B_CELL_NAIVE_27
101.3
B_CELL_NAIVE_28
101.1
B_CELL_NAIVE_29
101.0
B_CELL_NAIVE_30
100.7
B_CELL_NAIVE_31
100.2
B_CELL_NAIVE_32
100.0
B_CELL_NAIVE_33
99.8
B_CELL_NAIVE_34
98.6
B_CELL_NAIVE_35
97.5
B_CELL_NAIVE_36
97.1
B_CELL_NAIVE_37
96.8
B_CELL_NAIVE_38
95.6
B_CELL_NAIVE_39
95.6
B_CELL_NAIVE_40
95.6
B_CELL_NAIVE_41
95.3
B_CELL_NAIVE_42
95.2
B_CELL_NAIVE_43
95.0
B_CELL_NAIVE_44
94.1
B_CELL_NAIVE_45
94.0
B_CELL_NAIVE_46
94.0
B_CELL_NAIVE_47
93.2
B_CELL_NAIVE_48
93.1
B_CELL_NAIVE_49
93.0
B_CELL_NAIVE_50
92.9
B_CELL_NAIVE_51
92.5
B_CELL_NAIVE_52
92.4
B_CELL_NAIVE_53
91.2
B_CELL_NAIVE_54
90.8
B_CELL_NAIVE_55
89.9
B_CELL_NAIVE_56
89.7
B_CELL_NAIVE_57
89.6
B_CELL_NAIVE_58
89.4
B_CELL_NAIVE_59
89.3
B_CELL_NAIVE_60
88.0
B_CELL_NAIVE_61
87.9
B_CELL_NAIVE_62
87.8
B_CELL_NAIVE_63
87.7
B_CELL_NAIVE_64
87.0
B_CELL_NAIVE_65
86.8
B_CELL_NAIVE_66
86.8
B_CELL_NAIVE_67
86.4
B_CELL_NAIVE_68
85.9
B_CELL_NAIVE_69
85.6
B_CELL_NAIVE_70
85.5
B_CELL_NAIVE_71
85.1
B_CELL_NAIVE_72
84.1
B_CELL_NAIVE_73
83.2
B_CELL_NAIVE_74
82.7
B_CELL_NAIVE_75
82.2
B_CELL_NAIVE_76
81.9
B_CELL_NAIVE_77
81.8
B_CELL_NAIVE_78
81.5
B_CELL_NAIVE_79
80.6
B_CELL_NAIVE_80
79.7
B_CELL_NAIVE_81
79.5
B_CELL_NAIVE_82
79.0
B_CELL_NAIVE_83
78.5
B_CELL_NAIVE_84
76.4
B_CELL_NAIVE_85
76.3
B_CELL_NAIVE_86
75.4
B_CELL_NAIVE_87
75.3
B_CELL_NAIVE_88
74.6
B_CELL_NAIVE_89
71.5
B_CELL_NAIVE_90
66.5
B_CELL_NAIVE_91
59.3
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The Human Protein Atlas project is funded
