A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
92.6
nTPM
Monaco:
127.0
nTPM
Schmiedel:
116.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
92.6
HPA sample
nTPM
Classical monocyte nTPM: 58.9
Samples: 6
Max nTPM: 75.0
Min nTPM: 47.4
P10809_1003
57.7
P10809_1020
71.9
P10809_1039
75.0
P10809_1058
49.3
P10809_1080
51.9
P10809_1107
47.4
Intermediate monocyte nTPM: 81.8
Samples: 6
Max nTPM: 96.8
Min nTPM: 60.0
P10809_1004
77.0
P10809_1023
96.8
P10809_1042
96.7
P10809_1061
78.3
P10809_1081
60.0
P10809_1108
81.7
Non-classical monocyte nTPM: 92.6
Samples: 5
Max nTPM: 115.9
Min nTPM: 60.2
P10809_1005
87.1
P10809_1053
115.9
P10809_1072
102.2
P10809_1082
60.2
P10809_1109
97.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.0
Monaco sample
nTPM
Classical monocyte nTPM: 77.7
Samples: 4
Max nTPM: 105.7
Min nTPM: 59.1
RHH5313_R3680
73.0
RHH5221_R3593
73.0
RHH5250_R3622
59.1
RHH5279_R3651
105.7
Intermediate monocyte nTPM: 113.9
Samples: 4
Max nTPM: 133.7
Min nTPM: 89.9
RHH5314_R3681
116.7
RHH5222_R3594
89.9
RHH5251_R3623
115.2
RHH5280_R3652
133.7
Non-classical monocyte nTPM: 127.0
Samples: 4
Max nTPM: 160.7
Min nTPM: 85.6
RHH5315_R3682
150.6
RHH5223_R3595
85.6
RHH5252_R3624
110.9
RHH5281_R3653
160.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.3
Schmiedel sample id
TPM
Classical monocyte TPM: 41.9
Samples: 91
Max TPM: 54.3
Min TPM: 29.3
MONOCYTES_1
54.3
MONOCYTES_2
52.5
MONOCYTES_3
52.3
MONOCYTES_4
52.2
MONOCYTES_5
51.1
MONOCYTES_6
50.8
MONOCYTES_7
50.6
MONOCYTES_8
50.4
MONOCYTES_9
50.3
MONOCYTES_10
49.8
MONOCYTES_11
49.5
MONOCYTES_12
49.4
MONOCYTES_13
49.3
MONOCYTES_14
49.2
MONOCYTES_15
49.0
MONOCYTES_16
48.7
MONOCYTES_17
48.4
MONOCYTES_18
48.3
MONOCYTES_19
48.3
MONOCYTES_20
48.3
MONOCYTES_21
48.2
MONOCYTES_22
47.9
MONOCYTES_23
47.2
MONOCYTES_24
47.2
MONOCYTES_25
47.1
MONOCYTES_26
46.2
MONOCYTES_27
45.5
MONOCYTES_28
45.1
MONOCYTES_29
44.9
MONOCYTES_30
44.8
MONOCYTES_31
44.6
MONOCYTES_32
43.4
MONOCYTES_33
43.3
MONOCYTES_34
43.1
MONOCYTES_35
42.6
MONOCYTES_36
42.3
MONOCYTES_37
41.7
MONOCYTES_38
41.6
MONOCYTES_39
41.6
MONOCYTES_40
41.5
MONOCYTES_41
41.5
MONOCYTES_42
41.0
MONOCYTES_43
40.9
MONOCYTES_44
40.8
MONOCYTES_45
40.7
MONOCYTES_46
40.3
MONOCYTES_47
40.3
MONOCYTES_48
40.3
MONOCYTES_49
40.1
MONOCYTES_50
39.9
MONOCYTES_51
39.9
MONOCYTES_52
39.7
MONOCYTES_53
39.7
MONOCYTES_54
39.5
MONOCYTES_55
39.5
MONOCYTES_56
39.3
MONOCYTES_57
39.2
MONOCYTES_58
39.2
MONOCYTES_59
39.0
MONOCYTES_60
38.8
MONOCYTES_61
38.7
MONOCYTES_62
38.7
MONOCYTES_63
38.5
MONOCYTES_64
38.3
MONOCYTES_65
38.2
MONOCYTES_66
38.0
MONOCYTES_67
37.9
MONOCYTES_68
37.9
MONOCYTES_69
37.9
MONOCYTES_70
37.8
MONOCYTES_71
37.5
MONOCYTES_72
37.4
MONOCYTES_73
36.8
MONOCYTES_74
36.7
MONOCYTES_75
36.7
MONOCYTES_76
36.7
MONOCYTES_77
36.6
MONOCYTES_78
36.6
MONOCYTES_79
36.0
MONOCYTES_80
35.3
MONOCYTES_81
35.2
MONOCYTES_82
34.8
MONOCYTES_83
34.7
MONOCYTES_84
34.4
MONOCYTES_85
34.3
MONOCYTES_86
34.3
MONOCYTES_87
34.0
MONOCYTES_88
33.9
MONOCYTES_89
33.3
MONOCYTES_90
31.2
MONOCYTES_91
29.3
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Non-classical monocyte TPM: 116.3
Samples: 90
Max TPM: 177.9
Min TPM: 73.8
M2_1
177.9
M2_2
156.1
M2_3
155.9
M2_4
153.8
M2_5
152.6
M2_6
151.8
M2_7
149.2
M2_8
147.8
M2_9
145.0
M2_10
141.7
M2_11
140.3
M2_12
137.7
M2_13
136.4
M2_14
135.8
M2_15
132.3
M2_16
131.1
M2_17
129.1
M2_18
127.8
M2_19
127.8
M2_20
126.8
M2_21
125.7
M2_22
124.6
M2_23
124.5
M2_24
124.3
M2_25
123.3
M2_26
122.8
M2_27
121.9
M2_28
121.9
M2_29
121.8
M2_30
121.2
M2_31
121.2
M2_32
120.3
M2_33
120.2
M2_34
119.9
M2_35
119.5
M2_36
118.9
M2_37
117.9
M2_38
117.4
M2_39
116.3
M2_40
115.9
M2_41
115.0
M2_42
114.2
M2_43
114.1
M2_44
113.7
M2_45
113.7
M2_46
112.8
M2_47
112.1
M2_48
112.1
M2_49
112.0
M2_50
111.7
M2_51
111.3
M2_52
110.9
M2_53
110.6
M2_54
110.6
M2_55
110.2
M2_56
110.1
M2_57
109.5
M2_58
109.4
M2_59
109.1
M2_60
108.5
M2_61
108.3
M2_62
107.3
M2_63
107.2
M2_64
106.5
M2_65
106.0
M2_66
105.8
M2_67
105.3
M2_68
104.8
M2_69
104.6
M2_70
103.3
M2_71
103.1
M2_72
102.4
M2_73
102.2
M2_74
100.9
M2_75
100.4
M2_76
100.3
M2_77
100.0
M2_78
97.4
M2_79
96.7
M2_80
96.1
M2_81
95.5
M2_82
95.0
M2_83
94.8
M2_84
93.0
M2_85
91.2
M2_86
89.6
M2_87
88.9
M2_88
88.0
M2_89
86.7
M2_90
73.8
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