A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.3
nTPM
Monaco:
21.8
nTPM
Schmiedel:
37.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.3
HPA sample
nTPM
Memory B-cell nTPM: 18.3
Samples: 6
Max nTPM: 26.9
Min nTPM: 9.4
P10809_1017
9.4
P10809_1025
15.9
P10809_1044
26.9
P10809_1063
26.7
P10809_1092
16.1
P10809_1105
14.6
Naive B-cell nTPM: 17.5
Samples: 6
Max nTPM: 27.9
Min nTPM: 12.6
P10809_1011
12.6
P10809_1029
15.2
P10809_1048
18.0
P10809_1067
27.9
P10809_1091
14.9
P10809_1104
16.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 18.6
Samples: 4
Max nTPM: 21.7
Min nTPM: 14.7
RHH5310_R3677
14.7
RHH5218_R3590
21.7
RHH5247_R3619
19.9
RHH5276_R3648
18.1
Naive B-cell nTPM: 18.0
Samples: 4
Max nTPM: 28.6
Min nTPM: 12.0
RHH5308_R3675
12.0
RHH5216_R3588
28.6
RHH5245_R3617
12.8
RHH5274_R3646
18.7
Non-switched memory B-cell nTPM: 21.8
Samples: 4
Max nTPM: 27.6
Min nTPM: 16.3
RHH5309_R3676
18.6
RHH5217_R3589
24.8
RHH5246_R3618
27.6
RHH5275_R3647
16.3
Plasmablast nTPM: 12.7
Samples: 4
Max nTPM: 16.7
Min nTPM: 8.2
RHH5312_R3679
16.7
RHH5220_R3592
11.5
RHH5249_R3621
14.5
RHH5278_R3650
8.2
Switched memory B-cell nTPM: 18.9
Samples: 4
Max nTPM: 22.2
Min nTPM: 16.3
RHH5311_R3678
16.3
RHH5219_R3591
22.2
RHH5248_R3620
20.3
RHH5277_R3649
16.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.0
Schmiedel sample id
TPM
Naive B-cell TPM: 37.0
Samples: 91
Max TPM: 63.9
Min TPM: 22.6
B_CELL_NAIVE_1
63.9
B_CELL_NAIVE_2
61.6
B_CELL_NAIVE_3
59.7
B_CELL_NAIVE_4
55.2
B_CELL_NAIVE_5
54.3
B_CELL_NAIVE_6
51.4
B_CELL_NAIVE_7
50.9
B_CELL_NAIVE_8
48.9
B_CELL_NAIVE_9
45.6
B_CELL_NAIVE_10
44.7
B_CELL_NAIVE_11
44.7
B_CELL_NAIVE_12
43.6
B_CELL_NAIVE_13
43.3
B_CELL_NAIVE_14
43.1
B_CELL_NAIVE_15
42.9
B_CELL_NAIVE_16
42.5
B_CELL_NAIVE_17
40.9
B_CELL_NAIVE_18
40.7
B_CELL_NAIVE_19
40.6
B_CELL_NAIVE_20
40.4
B_CELL_NAIVE_21
40.3
B_CELL_NAIVE_22
40.0
B_CELL_NAIVE_23
39.9
B_CELL_NAIVE_24
39.7
B_CELL_NAIVE_25
39.5
B_CELL_NAIVE_26
39.4
B_CELL_NAIVE_27
39.0
B_CELL_NAIVE_28
38.5
B_CELL_NAIVE_29
38.4
B_CELL_NAIVE_30
38.0
B_CELL_NAIVE_31
37.9
B_CELL_NAIVE_32
37.9
B_CELL_NAIVE_33
37.7
B_CELL_NAIVE_34
37.7
B_CELL_NAIVE_35
37.4
B_CELL_NAIVE_36
37.4
B_CELL_NAIVE_37
37.1
B_CELL_NAIVE_38
37.0
B_CELL_NAIVE_39
36.7
B_CELL_NAIVE_40
36.3
B_CELL_NAIVE_41
36.0
B_CELL_NAIVE_42
35.9
B_CELL_NAIVE_43
35.8
B_CELL_NAIVE_44
35.6
B_CELL_NAIVE_45
35.6
B_CELL_NAIVE_46
35.6
B_CELL_NAIVE_47
35.6
B_CELL_NAIVE_48
35.5
B_CELL_NAIVE_49
35.4
B_CELL_NAIVE_50
35.1
B_CELL_NAIVE_51
35.1
B_CELL_NAIVE_52
34.8
B_CELL_NAIVE_53
34.5
B_CELL_NAIVE_54
34.5
B_CELL_NAIVE_55
34.4
B_CELL_NAIVE_56
34.4
B_CELL_NAIVE_57
34.2
B_CELL_NAIVE_58
34.0
B_CELL_NAIVE_59
34.0
B_CELL_NAIVE_60
33.8
B_CELL_NAIVE_61
33.6
B_CELL_NAIVE_62
33.5
B_CELL_NAIVE_63
33.5
B_CELL_NAIVE_64
33.3
B_CELL_NAIVE_65
33.1
B_CELL_NAIVE_66
33.0
B_CELL_NAIVE_67
32.9
B_CELL_NAIVE_68
32.8
B_CELL_NAIVE_69
32.8
B_CELL_NAIVE_70
32.8
B_CELL_NAIVE_71
31.9
B_CELL_NAIVE_72
31.9
B_CELL_NAIVE_73
31.7
B_CELL_NAIVE_74
31.7
B_CELL_NAIVE_75
31.6
B_CELL_NAIVE_76
31.4
B_CELL_NAIVE_77
31.4
B_CELL_NAIVE_78
30.8
B_CELL_NAIVE_79
30.7
B_CELL_NAIVE_80
30.0
B_CELL_NAIVE_81
29.7
B_CELL_NAIVE_82
29.0
B_CELL_NAIVE_83
28.8
B_CELL_NAIVE_84
28.7
B_CELL_NAIVE_85
28.2
B_CELL_NAIVE_86
28.1
B_CELL_NAIVE_87
27.1
B_CELL_NAIVE_88
26.9
B_CELL_NAIVE_89
26.9
B_CELL_NAIVE_90
25.3
B_CELL_NAIVE_91
22.6
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The Human Protein Atlas project is funded
