A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.1
nTPM
Monaco:
15.1
nTPM
Schmiedel:
19.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
HPA sample
nTPM
Classical monocyte nTPM: 8.7
Samples: 6
Max nTPM: 10.7
Min nTPM: 5.6
P10809_1003
5.6
P10809_1020
10.4
P10809_1039
8.0
P10809_1058
9.9
P10809_1080
7.6
P10809_1107
10.7
Intermediate monocyte nTPM: 11.1
Samples: 6
Max nTPM: 15.4
Min nTPM: 8.0
P10809_1004
8.0
P10809_1023
11.1
P10809_1042
9.6
P10809_1061
11.9
P10809_1081
10.6
P10809_1108
15.4
Non-classical monocyte nTPM: 14.1
Samples: 5
Max nTPM: 29.5
Min nTPM: 6.6
P10809_1005
6.6
P10809_1053
8.4
P10809_1072
29.5
P10809_1082
13.6
P10809_1109
12.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.1
Monaco sample
nTPM
Classical monocyte nTPM: 13.5
Samples: 4
Max nTPM: 15.5
Min nTPM: 11.6
RHH5313_R3680
13.6
RHH5221_R3593
11.6
RHH5250_R3622
15.5
RHH5279_R3651
13.2
Intermediate monocyte nTPM: 15.1
Samples: 4
Max nTPM: 16.6
Min nTPM: 13.3
RHH5314_R3681
15.3
RHH5222_R3594
16.6
RHH5251_R3623
13.3
RHH5280_R3652
15.0
Non-classical monocyte nTPM: 13.6
Samples: 4
Max nTPM: 15.9
Min nTPM: 11.6
RHH5315_R3682
15.9
RHH5223_R3595
12.4
RHH5252_R3624
14.6
RHH5281_R3653
11.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.2
Schmiedel sample id
TPM
Classical monocyte TPM: 11.7
Samples: 91
Max TPM: 18.1
Min TPM: 7.7
MONOCYTES_1
18.1
MONOCYTES_2
16.3
MONOCYTES_3
15.6
MONOCYTES_4
15.1
MONOCYTES_5
15.0
MONOCYTES_6
15.0
MONOCYTES_7
15.0
MONOCYTES_8
14.7
MONOCYTES_9
14.6
MONOCYTES_10
14.5
MONOCYTES_11
14.5
MONOCYTES_12
14.3
MONOCYTES_13
14.2
MONOCYTES_14
14.0
MONOCYTES_15
13.9
MONOCYTES_16
13.7
MONOCYTES_17
13.7
MONOCYTES_18
13.7
MONOCYTES_19
13.7
MONOCYTES_20
13.6
MONOCYTES_21
13.6
MONOCYTES_22
13.4
MONOCYTES_23
13.4
MONOCYTES_24
13.1
MONOCYTES_25
13.0
MONOCYTES_26
12.9
MONOCYTES_27
12.7
MONOCYTES_28
12.6
MONOCYTES_29
12.5
MONOCYTES_30
12.5
MONOCYTES_31
12.4
MONOCYTES_32
12.4
MONOCYTES_33
12.3
MONOCYTES_34
12.3
MONOCYTES_35
12.1
MONOCYTES_36
12.0
MONOCYTES_37
11.9
MONOCYTES_38
11.8
MONOCYTES_39
11.7
MONOCYTES_40
11.7
MONOCYTES_41
11.6
MONOCYTES_42
11.5
MONOCYTES_43
11.5
MONOCYTES_44
11.5
MONOCYTES_45
11.4
MONOCYTES_46
11.4
MONOCYTES_47
11.4
MONOCYTES_48
11.4
MONOCYTES_49
11.3
MONOCYTES_50
11.3
MONOCYTES_51
11.3
MONOCYTES_52
11.2
MONOCYTES_53
11.1
MONOCYTES_54
11.0
MONOCYTES_55
11.0
MONOCYTES_56
11.0
MONOCYTES_57
11.0
MONOCYTES_58
11.0
MONOCYTES_59
10.9
MONOCYTES_60
10.8
MONOCYTES_61
10.7
MONOCYTES_62
10.6
MONOCYTES_63
10.4
MONOCYTES_64
10.3
MONOCYTES_65
10.3
MONOCYTES_66
10.3
MONOCYTES_67
10.2
MONOCYTES_68
10.1
MONOCYTES_69
10.0
MONOCYTES_70
10.0
MONOCYTES_71
9.8
MONOCYTES_72
9.8
MONOCYTES_73
9.7
MONOCYTES_74
9.7
MONOCYTES_75
9.7
MONOCYTES_76
9.6
MONOCYTES_77
9.6
MONOCYTES_78
9.6
MONOCYTES_79
9.6
MONOCYTES_80
9.5
MONOCYTES_81
9.4
MONOCYTES_82
9.3
MONOCYTES_83
9.3
MONOCYTES_84
9.1
MONOCYTES_85
9.1
MONOCYTES_86
8.8
MONOCYTES_87
8.7
MONOCYTES_88
8.3
MONOCYTES_89
8.2
MONOCYTES_90
7.8
MONOCYTES_91
7.7
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Non-classical monocyte TPM: 19.3
Samples: 90
Max TPM: 32.1
Min TPM: 12.0
M2_1
32.1
M2_2
30.8
M2_3
27.9
M2_4
27.1
M2_5
25.5
M2_6
25.1
M2_7
25.0
M2_8
24.9
M2_9
24.9
M2_10
24.7
M2_11
24.4
M2_12
24.0
M2_13
23.9
M2_14
23.7
M2_15
23.5
M2_16
23.3
M2_17
22.9
M2_18
22.9
M2_19
22.7
M2_20
22.6
M2_21
22.4
M2_22
21.9
M2_23
21.8
M2_24
21.7
M2_25
21.5
M2_26
21.4
M2_27
21.2
M2_28
21.0
M2_29
20.7
M2_30
20.4
M2_31
20.0
M2_32
20.0
M2_33
19.9
M2_34
19.8
M2_35
19.2
M2_36
19.2
M2_37
19.0
M2_38
18.9
M2_39
18.9
M2_40
18.9
M2_41
18.7
M2_42
18.6
M2_43
18.6
M2_44
18.4
M2_45
18.2
M2_46
18.1
M2_47
18.1
M2_48
18.1
M2_49
18.0
M2_50
17.9
M2_51
17.8
M2_52
17.6
M2_53
17.6
M2_54
17.4
M2_55
17.3
M2_56
17.3
M2_57
17.3
M2_58
17.2
M2_59
17.2
M2_60
17.2
M2_61
17.1
M2_62
17.0
M2_63
16.9
M2_64
16.7
M2_65
16.6
M2_66
16.4
M2_67
16.4
M2_68
16.4
M2_69
16.4
M2_70
16.3
M2_71
16.2
M2_72
16.1
M2_73
15.9
M2_74
15.8
M2_75
15.8
M2_76
15.8
M2_77
15.8
M2_78
15.7
M2_79
15.5
M2_80
15.5
M2_81
15.4
M2_82
15.2
M2_83
15.0
M2_84
15.0
M2_85
14.6
M2_86
14.1
M2_87
13.9
M2_88
13.9
M2_89
12.9
M2_90
12.0
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