A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.8
nTPM
Monaco:
19.8
nTPM
Schmiedel:
58.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.8
HPA sample
nTPM
Memory B-cell nTPM: 1.9
Samples: 6
Max nTPM: 4.2
Min nTPM: 0.5
P10809_1017
1.0
P10809_1025
2.7
P10809_1044
4.2
P10809_1063
0.5
P10809_1092
0.9
P10809_1105
1.8
Naive B-cell nTPM: 1.1
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.0
P10809_1011
1.1
P10809_1029
1.4
P10809_1048
0.0
P10809_1067
1.6
P10809_1091
1.2
P10809_1104
1.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 13.9
Samples: 4
Max nTPM: 15.5
Min nTPM: 12.1
RHH5310_R3677
14.8
RHH5218_R3590
13.2
RHH5247_R3619
12.1
RHH5276_R3648
15.5
Naive B-cell nTPM: 16.6
Samples: 4
Max nTPM: 22.1
Min nTPM: 11.3
RHH5308_R3675
11.4
RHH5216_R3588
22.1
RHH5245_R3617
21.7
RHH5274_R3646
11.3
Non-switched memory B-cell nTPM: 19.8
Samples: 4
Max nTPM: 22.6
Min nTPM: 16.8
RHH5309_R3676
22.6
RHH5217_R3589
18.9
RHH5246_R3618
16.8
RHH5275_R3647
20.8
Plasmablast nTPM: 7.0
Samples: 4
Max nTPM: 9.3
Min nTPM: 4.3
RHH5312_R3679
8.4
RHH5220_R3592
6.1
RHH5249_R3621
4.3
RHH5278_R3650
9.3
Switched memory B-cell nTPM: 13.6
Samples: 4
Max nTPM: 19.3
Min nTPM: 9.2
RHH5311_R3678
9.2
RHH5219_R3591
9.8
RHH5248_R3620
16.2
RHH5277_R3649
19.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.4
Schmiedel sample id
TPM
Naive B-cell TPM: 58.4
Samples: 91
Max TPM: 85.0
Min TPM: 38.8
B_CELL_NAIVE_1
85.0
B_CELL_NAIVE_2
76.2
B_CELL_NAIVE_3
76.1
B_CELL_NAIVE_4
74.0
B_CELL_NAIVE_5
73.6
B_CELL_NAIVE_6
73.2
B_CELL_NAIVE_7
71.9
B_CELL_NAIVE_8
70.9
B_CELL_NAIVE_9
70.6
B_CELL_NAIVE_10
68.8
B_CELL_NAIVE_11
68.5
B_CELL_NAIVE_12
68.3
B_CELL_NAIVE_13
68.0
B_CELL_NAIVE_14
67.7
B_CELL_NAIVE_15
67.3
B_CELL_NAIVE_16
66.3
B_CELL_NAIVE_17
66.2
B_CELL_NAIVE_18
66.0
B_CELL_NAIVE_19
65.3
B_CELL_NAIVE_20
65.2
B_CELL_NAIVE_21
65.1
B_CELL_NAIVE_22
64.8
B_CELL_NAIVE_23
64.8
B_CELL_NAIVE_24
64.2
B_CELL_NAIVE_25
63.5
B_CELL_NAIVE_26
63.2
B_CELL_NAIVE_27
62.9
B_CELL_NAIVE_28
62.8
B_CELL_NAIVE_29
62.6
B_CELL_NAIVE_30
62.5
B_CELL_NAIVE_31
61.9
B_CELL_NAIVE_32
61.8
B_CELL_NAIVE_33
61.5
B_CELL_NAIVE_34
61.0
B_CELL_NAIVE_35
60.6
B_CELL_NAIVE_36
60.5
B_CELL_NAIVE_37
60.1
B_CELL_NAIVE_38
60.1
B_CELL_NAIVE_39
60.1
B_CELL_NAIVE_40
59.7
B_CELL_NAIVE_41
59.6
B_CELL_NAIVE_42
59.5
B_CELL_NAIVE_43
59.5
B_CELL_NAIVE_44
59.4
B_CELL_NAIVE_45
58.9
B_CELL_NAIVE_46
58.8
B_CELL_NAIVE_47
58.7
B_CELL_NAIVE_48
58.5
B_CELL_NAIVE_49
58.2
B_CELL_NAIVE_50
57.9
B_CELL_NAIVE_51
57.4
B_CELL_NAIVE_52
57.2
B_CELL_NAIVE_53
57.0
B_CELL_NAIVE_54
56.7
B_CELL_NAIVE_55
56.2
B_CELL_NAIVE_56
55.5
B_CELL_NAIVE_57
55.5
B_CELL_NAIVE_58
55.1
B_CELL_NAIVE_59
54.9
B_CELL_NAIVE_60
54.5
B_CELL_NAIVE_61
54.1
B_CELL_NAIVE_62
53.8
B_CELL_NAIVE_63
53.7
B_CELL_NAIVE_64
53.5
B_CELL_NAIVE_65
53.5
B_CELL_NAIVE_66
53.0
B_CELL_NAIVE_67
52.7
B_CELL_NAIVE_68
52.5
B_CELL_NAIVE_69
51.9
B_CELL_NAIVE_70
51.5
B_CELL_NAIVE_71
51.5
B_CELL_NAIVE_72
50.6
B_CELL_NAIVE_73
49.7
B_CELL_NAIVE_74
49.5
B_CELL_NAIVE_75
49.4
B_CELL_NAIVE_76
49.1
B_CELL_NAIVE_77
49.0
B_CELL_NAIVE_78
48.4
B_CELL_NAIVE_79
47.9
B_CELL_NAIVE_80
47.6
B_CELL_NAIVE_81
47.4
B_CELL_NAIVE_82
47.4
B_CELL_NAIVE_83
46.6
B_CELL_NAIVE_84
46.5
B_CELL_NAIVE_85
46.4
B_CELL_NAIVE_86
45.2
B_CELL_NAIVE_87
44.7
B_CELL_NAIVE_88
44.5
B_CELL_NAIVE_89
43.7
B_CELL_NAIVE_90
41.5
B_CELL_NAIVE_91
38.8
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