A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
18.3
nTPM
Schmiedel:
52.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
Classical monocyte nTPM: 1.1
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.6
P10809_1003
2.0
P10809_1020
0.6
P10809_1039
1.0
P10809_1058
0.8
P10809_1080
1.1
P10809_1107
0.9
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.5
Min nTPM: 0.0
P10809_1004
1.5
P10809_1023
0.4
P10809_1042
1.0
P10809_1061
0.0
P10809_1081
1.1
P10809_1108
0.3
Non-classical monocyte nTPM: 0.9
Samples: 5
Max nTPM: 1.9
Min nTPM: 0.5
P10809_1005
1.9
P10809_1053
0.5
P10809_1072
0.5
P10809_1082
0.7
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.3
Monaco sample
nTPM
Classical monocyte nTPM: 18.3
Samples: 4
Max nTPM: 23.7
Min nTPM: 15.2
RHH5313_R3680
18.6
RHH5221_R3593
15.2
RHH5250_R3622
23.7
RHH5279_R3651
15.6
Intermediate monocyte nTPM: 11.7
Samples: 4
Max nTPM: 17.5
Min nTPM: 3.9
RHH5314_R3681
13.0
RHH5222_R3594
3.9
RHH5251_R3623
17.5
RHH5280_R3652
12.4
Non-classical monocyte nTPM: 14.0
Samples: 4
Max nTPM: 16.4
Min nTPM: 11.0
RHH5315_R3682
16.2
RHH5223_R3595
11.0
RHH5252_R3624
12.6
RHH5281_R3653
16.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.0
Schmiedel sample id
TPM
Classical monocyte TPM: 52.0
Samples: 91
Max TPM: 65.2
Min TPM: 38.2
MONOCYTES_1
65.2
MONOCYTES_2
65.1
MONOCYTES_3
64.0
MONOCYTES_4
62.7
MONOCYTES_5
60.7
MONOCYTES_6
59.9
MONOCYTES_7
59.7
MONOCYTES_8
59.7
MONOCYTES_9
59.6
MONOCYTES_10
59.4
MONOCYTES_11
59.3
MONOCYTES_12
58.4
MONOCYTES_13
58.3
MONOCYTES_14
57.8
MONOCYTES_15
57.4
MONOCYTES_16
57.0
MONOCYTES_17
56.5
MONOCYTES_18
55.9
MONOCYTES_19
55.8
MONOCYTES_20
55.7
MONOCYTES_21
55.5
MONOCYTES_22
55.4
MONOCYTES_23
55.4
MONOCYTES_24
55.2
MONOCYTES_25
54.9
MONOCYTES_26
54.9
MONOCYTES_27
54.5
MONOCYTES_28
53.9
MONOCYTES_29
53.6
MONOCYTES_30
53.5
MONOCYTES_31
53.2
MONOCYTES_32
53.1
MONOCYTES_33
52.9
MONOCYTES_34
52.6
MONOCYTES_35
52.4
MONOCYTES_36
52.4
MONOCYTES_37
52.4
MONOCYTES_38
52.3
MONOCYTES_39
52.2
MONOCYTES_40
52.1
MONOCYTES_41
52.0
MONOCYTES_42
51.9
MONOCYTES_43
51.5
MONOCYTES_44
51.4
MONOCYTES_45
51.3
MONOCYTES_46
51.1
MONOCYTES_47
51.0
MONOCYTES_48
50.9
MONOCYTES_49
50.9
MONOCYTES_50
50.6
MONOCYTES_51
50.5
MONOCYTES_52
50.5
MONOCYTES_53
50.4
MONOCYTES_54
50.4
MONOCYTES_55
50.3
MONOCYTES_56
50.2
MONOCYTES_57
50.0
MONOCYTES_58
49.8
MONOCYTES_59
49.8
MONOCYTES_60
49.6
MONOCYTES_61
49.5
MONOCYTES_62
49.4
MONOCYTES_63
49.4
MONOCYTES_64
49.3
MONOCYTES_65
49.3
MONOCYTES_66
49.1
MONOCYTES_67
49.0
MONOCYTES_68
48.8
MONOCYTES_69
48.6
MONOCYTES_70
48.6
MONOCYTES_71
48.5
MONOCYTES_72
48.5
MONOCYTES_73
48.3
MONOCYTES_74
48.3
MONOCYTES_75
47.9
MONOCYTES_76
47.8
MONOCYTES_77
47.7
MONOCYTES_78
47.7
MONOCYTES_79
47.6
MONOCYTES_80
46.6
MONOCYTES_81
46.5
MONOCYTES_82
46.5
MONOCYTES_83
45.9
MONOCYTES_84
45.8
MONOCYTES_85
45.3
MONOCYTES_86
45.0
MONOCYTES_87
43.7
MONOCYTES_88
43.1
MONOCYTES_89
41.9
MONOCYTES_90
41.6
MONOCYTES_91
38.2
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Non-classical monocyte TPM: 33.5
Samples: 90
Max TPM: 41.2
Min TPM: 23.4
M2_1
41.2
M2_2
41.0
M2_3
41.0
M2_4
40.5
M2_5
40.1
M2_6
39.7
M2_7
39.6
M2_8
39.6
M2_9
39.2
M2_10
39.1
M2_11
38.6
M2_12
38.6
M2_13
38.2
M2_14
38.1
M2_15
38.0
M2_16
37.3
M2_17
37.3
M2_18
37.3
M2_19
37.1
M2_20
36.8
M2_21
36.6
M2_22
36.4
M2_23
36.1
M2_24
36.0
M2_25
35.9
M2_26
35.8
M2_27
35.7
M2_28
35.7
M2_29
35.5
M2_30
34.9
M2_31
34.9
M2_32
34.8
M2_33
34.7
M2_34
34.6
M2_35
34.6
M2_36
34.5
M2_37
34.4
M2_38
34.2
M2_39
34.1
M2_40
34.1
M2_41
33.9
M2_42
33.5
M2_43
33.4
M2_44
33.4
M2_45
33.3
M2_46
33.3
M2_47
33.1
M2_48
32.9
M2_49
32.9
M2_50
32.8
M2_51
32.7
M2_52
32.7
M2_53
32.6
M2_54
32.5
M2_55
32.3
M2_56
32.3
M2_57
32.3
M2_58
32.2
M2_59
32.1
M2_60
32.1
M2_61
32.0
M2_62
31.9
M2_63
31.8
M2_64
31.8
M2_65
31.7
M2_66
31.7
M2_67
31.6
M2_68
31.5
M2_69
31.3
M2_70
31.1
M2_71
30.9
M2_72
30.5
M2_73
30.4
M2_74
30.3
M2_75
29.5
M2_76
29.4
M2_77
29.3
M2_78
29.1
M2_79
28.8
M2_80
28.5
M2_81
28.5
M2_82
28.4
M2_83
28.0
M2_84
27.7
M2_85
27.3
M2_86
26.9
M2_87
26.4
M2_88
25.1
M2_89
24.4
M2_90
23.4
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