A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
171.3
nTPM
Monaco:
418.9
nTPM
Schmiedel:
84.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.3
HPA sample
nTPM
Memory B-cell nTPM: 171.3
Samples: 6
Max nTPM: 288.5
Min nTPM: 115.5
P10809_1017
115.5
P10809_1025
175.5
P10809_1044
288.5
P10809_1063
122.8
P10809_1092
167.2
P10809_1105
158.1
Naive B-cell nTPM: 153.9
Samples: 6
Max nTPM: 378.8
Min nTPM: 75.6
P10809_1011
75.6
P10809_1029
98.3
P10809_1048
378.8
P10809_1067
95.1
P10809_1091
141.9
P10809_1104
133.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
418.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 281.0
Samples: 4
Max nTPM: 352.8
Min nTPM: 171.5
RHH5310_R3677
352.8
RHH5218_R3590
314.5
RHH5247_R3619
285.2
RHH5276_R3648
171.5
Naive B-cell nTPM: 250.2
Samples: 4
Max nTPM: 302.1
Min nTPM: 167.5
RHH5308_R3675
275.0
RHH5216_R3588
302.1
RHH5245_R3617
167.5
RHH5274_R3646
256.3
Non-switched memory B-cell nTPM: 299.8
Samples: 4
Max nTPM: 352.0
Min nTPM: 233.0
RHH5309_R3676
318.8
RHH5217_R3589
295.5
RHH5246_R3618
352.0
RHH5275_R3647
233.0
Plasmablast nTPM: 419.0
Samples: 4
Max nTPM: 460.6
Min nTPM: 355.0
RHH5312_R3679
442.6
RHH5220_R3592
417.6
RHH5249_R3621
460.6
RHH5278_R3650
355.0
Switched memory B-cell nTPM: 325.1
Samples: 4
Max nTPM: 376.2
Min nTPM: 240.0
RHH5311_R3678
341.4
RHH5219_R3591
376.2
RHH5248_R3620
342.7
RHH5277_R3649
240.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.9
Schmiedel sample id
TPM
Naive B-cell TPM: 84.9
Samples: 91
Max TPM: 132.4
Min TPM: 52.6
B_CELL_NAIVE_1
132.4
B_CELL_NAIVE_2
122.1
B_CELL_NAIVE_3
114.9
B_CELL_NAIVE_4
109.2
B_CELL_NAIVE_5
108.9
B_CELL_NAIVE_6
105.6
B_CELL_NAIVE_7
104.9
B_CELL_NAIVE_8
103.3
B_CELL_NAIVE_9
102.9
B_CELL_NAIVE_10
102.4
B_CELL_NAIVE_11
102.3
B_CELL_NAIVE_12
102.2
B_CELL_NAIVE_13
101.8
B_CELL_NAIVE_14
100.6
B_CELL_NAIVE_15
100.6
B_CELL_NAIVE_16
99.2
B_CELL_NAIVE_17
99.0
B_CELL_NAIVE_18
97.3
B_CELL_NAIVE_19
96.8
B_CELL_NAIVE_20
96.2
B_CELL_NAIVE_21
95.4
B_CELL_NAIVE_22
94.6
B_CELL_NAIVE_23
94.2
B_CELL_NAIVE_24
94.1
B_CELL_NAIVE_25
93.9
B_CELL_NAIVE_26
93.3
B_CELL_NAIVE_27
92.0
B_CELL_NAIVE_28
90.7
B_CELL_NAIVE_29
90.1
B_CELL_NAIVE_30
89.1
B_CELL_NAIVE_31
88.9
B_CELL_NAIVE_32
88.4
B_CELL_NAIVE_33
87.9
B_CELL_NAIVE_34
87.3
B_CELL_NAIVE_35
86.9
B_CELL_NAIVE_36
86.8
B_CELL_NAIVE_37
86.4
B_CELL_NAIVE_38
86.1
B_CELL_NAIVE_39
85.4
B_CELL_NAIVE_40
85.3
B_CELL_NAIVE_41
85.2
B_CELL_NAIVE_42
84.4
B_CELL_NAIVE_43
84.1
B_CELL_NAIVE_44
83.4
B_CELL_NAIVE_45
82.3
B_CELL_NAIVE_46
82.0
B_CELL_NAIVE_47
81.9
B_CELL_NAIVE_48
81.4
B_CELL_NAIVE_49
80.8
B_CELL_NAIVE_50
80.5
B_CELL_NAIVE_51
80.5
B_CELL_NAIVE_52
80.4
B_CELL_NAIVE_53
80.2
B_CELL_NAIVE_54
79.4
B_CELL_NAIVE_55
79.0
B_CELL_NAIVE_56
78.9
B_CELL_NAIVE_57
78.7
B_CELL_NAIVE_58
78.6
B_CELL_NAIVE_59
78.5
B_CELL_NAIVE_60
78.3
B_CELL_NAIVE_61
78.2
B_CELL_NAIVE_62
76.5
B_CELL_NAIVE_63
76.4
B_CELL_NAIVE_64
76.3
B_CELL_NAIVE_65
76.3
B_CELL_NAIVE_66
75.9
B_CELL_NAIVE_67
75.9
B_CELL_NAIVE_68
75.6
B_CELL_NAIVE_69
75.2
B_CELL_NAIVE_70
74.8
B_CELL_NAIVE_71
74.4
B_CELL_NAIVE_72
74.0
B_CELL_NAIVE_73
73.9
B_CELL_NAIVE_74
73.8
B_CELL_NAIVE_75
73.7
B_CELL_NAIVE_76
72.3
B_CELL_NAIVE_77
72.3
B_CELL_NAIVE_78
72.1
B_CELL_NAIVE_79
71.4
B_CELL_NAIVE_80
71.3
B_CELL_NAIVE_81
70.3
B_CELL_NAIVE_82
70.2
B_CELL_NAIVE_83
70.0
B_CELL_NAIVE_84
69.3
B_CELL_NAIVE_85
69.2
B_CELL_NAIVE_86
67.9
B_CELL_NAIVE_87
67.9
B_CELL_NAIVE_88
65.0
B_CELL_NAIVE_89
62.9
B_CELL_NAIVE_90
53.7
B_CELL_NAIVE_91
52.6
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