A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
187.3
nTPM
Monaco:
354.3
nTPM
Schmiedel:
126.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
187.3
HPA sample
nTPM
Classical monocyte nTPM: 175.7
Samples: 6
Max nTPM: 268.3
Min nTPM: 111.4
P10809_1003
149.1
P10809_1020
164.4
P10809_1039
268.3
P10809_1058
111.4
P10809_1080
188.5
P10809_1107
172.5
Intermediate monocyte nTPM: 187.3
Samples: 6
Max nTPM: 248.2
Min nTPM: 101.7
P10809_1004
151.1
P10809_1023
229.4
P10809_1042
248.2
P10809_1061
101.7
P10809_1081
179.8
P10809_1108
213.8
Non-classical monocyte nTPM: 181.3
Samples: 5
Max nTPM: 221.9
Min nTPM: 142.8
P10809_1005
156.2
P10809_1053
221.9
P10809_1072
142.8
P10809_1082
180.7
P10809_1109
205.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
354.3
Monaco sample
nTPM
Classical monocyte nTPM: 354.3
Samples: 4
Max nTPM: 401.0
Min nTPM: 325.3
RHH5313_R3680
346.4
RHH5221_R3593
325.3
RHH5250_R3622
401.0
RHH5279_R3651
344.3
Intermediate monocyte nTPM: 297.3
Samples: 4
Max nTPM: 351.0
Min nTPM: 201.7
RHH5314_R3681
351.0
RHH5222_R3594
201.7
RHH5251_R3623
306.9
RHH5280_R3652
329.5
Non-classical monocyte nTPM: 314.0
Samples: 4
Max nTPM: 384.4
Min nTPM: 234.2
RHH5315_R3682
339.0
RHH5223_R3595
234.2
RHH5252_R3624
298.2
RHH5281_R3653
384.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
126.5
Schmiedel sample id
TPM
Classical monocyte TPM: 97.4
Samples: 91
Max TPM: 127.8
Min TPM: 71.3
MONOCYTES_1
127.8
MONOCYTES_2
123.3
MONOCYTES_3
123.1
MONOCYTES_4
121.9
MONOCYTES_5
120.2
MONOCYTES_6
119.8
MONOCYTES_7
117.6
MONOCYTES_8
116.3
MONOCYTES_9
115.2
MONOCYTES_10
113.4
MONOCYTES_11
113.2
MONOCYTES_12
112.7
MONOCYTES_13
112.6
MONOCYTES_14
112.3
MONOCYTES_15
111.0
MONOCYTES_16
110.9
MONOCYTES_17
110.6
MONOCYTES_18
109.2
MONOCYTES_19
109.1
MONOCYTES_20
108.8
MONOCYTES_21
108.8
MONOCYTES_22
107.9
MONOCYTES_23
106.9
MONOCYTES_24
106.6
MONOCYTES_25
105.9
MONOCYTES_26
105.9
MONOCYTES_27
105.8
MONOCYTES_28
105.5
MONOCYTES_29
104.4
MONOCYTES_30
103.8
MONOCYTES_31
103.3
MONOCYTES_32
102.4
MONOCYTES_33
101.9
MONOCYTES_34
101.8
MONOCYTES_35
101.6
MONOCYTES_36
101.1
MONOCYTES_37
99.2
MONOCYTES_38
98.7
MONOCYTES_39
98.7
MONOCYTES_40
98.7
MONOCYTES_41
98.5
MONOCYTES_42
96.3
MONOCYTES_43
95.8
MONOCYTES_44
95.8
MONOCYTES_45
95.0
MONOCYTES_46
94.9
MONOCYTES_47
94.3
MONOCYTES_48
93.8
MONOCYTES_49
93.8
MONOCYTES_50
93.6
MONOCYTES_51
93.2
MONOCYTES_52
93.0
MONOCYTES_53
92.8
MONOCYTES_54
92.6
MONOCYTES_55
92.6
MONOCYTES_56
92.4
MONOCYTES_57
91.9
MONOCYTES_58
91.7
MONOCYTES_59
91.4
MONOCYTES_60
91.3
MONOCYTES_61
90.8
MONOCYTES_62
90.6
MONOCYTES_63
90.4
MONOCYTES_64
90.3
MONOCYTES_65
90.2
MONOCYTES_66
90.2
MONOCYTES_67
89.9
MONOCYTES_68
89.1
MONOCYTES_69
88.9
MONOCYTES_70
88.6
MONOCYTES_71
88.1
MONOCYTES_72
87.8
MONOCYTES_73
87.1
MONOCYTES_74
87.1
MONOCYTES_75
87.0
MONOCYTES_76
86.6
MONOCYTES_77
86.1
MONOCYTES_78
85.1
MONOCYTES_79
85.0
MONOCYTES_80
84.7
MONOCYTES_81
84.2
MONOCYTES_82
81.5
MONOCYTES_83
80.4
MONOCYTES_84
79.7
MONOCYTES_85
76.7
MONOCYTES_86
76.1
MONOCYTES_87
75.9
MONOCYTES_88
74.0
MONOCYTES_89
71.5
MONOCYTES_90
71.5
MONOCYTES_91
71.3
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Non-classical monocyte TPM: 126.5
Samples: 90
Max TPM: 176.5
Min TPM: 87.1
M2_1
176.5
M2_2
165.5
M2_3
163.7
M2_4
156.2
M2_5
155.8
M2_6
155.5
M2_7
151.3
M2_8
150.7
M2_9
149.8
M2_10
148.8
M2_11
145.8
M2_12
144.3
M2_13
144.1
M2_14
142.9
M2_15
142.7
M2_16
142.5
M2_17
142.0
M2_18
140.1
M2_19
139.8
M2_20
138.4
M2_21
137.7
M2_22
137.4
M2_23
136.3
M2_24
136.0
M2_25
135.9
M2_26
135.5
M2_27
135.5
M2_28
134.9
M2_29
134.5
M2_30
133.2
M2_31
131.7
M2_32
131.7
M2_33
131.4
M2_34
131.0
M2_35
131.0
M2_36
130.9
M2_37
130.6
M2_38
130.3
M2_39
129.6
M2_40
129.6
M2_41
129.2
M2_42
128.6
M2_43
128.0
M2_44
127.8
M2_45
127.4
M2_46
126.1
M2_47
125.1
M2_48
124.0
M2_49
123.3
M2_50
122.8
M2_51
122.7
M2_52
122.5
M2_53
121.9
M2_54
121.8
M2_55
121.3
M2_56
121.1
M2_57
120.5
M2_58
120.3
M2_59
118.9
M2_60
117.9
M2_61
117.3
M2_62
117.0
M2_63
117.0
M2_64
116.6
M2_65
115.1
M2_66
115.0
M2_67
113.9
M2_68
113.8
M2_69
113.6
M2_70
113.2
M2_71
113.0
M2_72
113.0
M2_73
111.6
M2_74
111.3
M2_75
111.1
M2_76
110.3
M2_77
109.8
M2_78
109.7
M2_79
109.2
M2_80
106.0
M2_81
105.1
M2_82
104.7
M2_83
104.2
M2_84
103.9
M2_85
102.6
M2_86
99.5
M2_87
99.0
M2_88
93.8
M2_89
92.6
M2_90
87.1
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