A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.1
nTPM
Monaco:
37.8
nTPM
Schmiedel:
17.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.1
HPA sample
nTPM
Memory B-cell nTPM: 12.1
Samples: 6
Max nTPM: 15.7
Min nTPM: 5.3
P10809_1017
5.3
P10809_1025
14.1
P10809_1044
8.8
P10809_1063
15.1
P10809_1092
15.7
P10809_1105
13.6
Naive B-cell nTPM: 9.9
Samples: 6
Max nTPM: 15.4
Min nTPM: 0.4
P10809_1011
5.2
P10809_1029
12.0
P10809_1048
0.4
P10809_1067
15.4
P10809_1091
14.2
P10809_1104
12.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 20.9
Samples: 4
Max nTPM: 27.0
Min nTPM: 13.9
RHH5310_R3677
23.4
RHH5218_R3590
13.9
RHH5247_R3619
19.1
RHH5276_R3648
27.0
Naive B-cell nTPM: 37.8
Samples: 4
Max nTPM: 46.1
Min nTPM: 31.6
RHH5308_R3675
46.1
RHH5216_R3588
35.9
RHH5245_R3617
31.6
RHH5274_R3646
37.7
Non-switched memory B-cell nTPM: 30.3
Samples: 4
Max nTPM: 40.8
Min nTPM: 15.6
RHH5309_R3676
15.6
RHH5217_R3589
33.8
RHH5246_R3618
40.8
RHH5275_R3647
31.0
Plasmablast nTPM: 26.0
Samples: 4
Max nTPM: 30.2
Min nTPM: 22.1
RHH5312_R3679
30.2
RHH5220_R3592
28.0
RHH5249_R3621
22.1
RHH5278_R3650
23.6
Switched memory B-cell nTPM: 23.2
Samples: 4
Max nTPM: 34.7
Min nTPM: 14.2
RHH5311_R3678
14.2
RHH5219_R3591
21.6
RHH5248_R3620
22.1
RHH5277_R3649
34.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.3
Schmiedel sample id
TPM
Naive B-cell TPM: 17.3
Samples: 91
Max TPM: 23.2
Min TPM: 11.4
B_CELL_NAIVE_1
23.2
B_CELL_NAIVE_2
22.9
B_CELL_NAIVE_3
22.3
B_CELL_NAIVE_4
22.2
B_CELL_NAIVE_5
22.0
B_CELL_NAIVE_6
21.6
B_CELL_NAIVE_7
21.5
B_CELL_NAIVE_8
21.4
B_CELL_NAIVE_9
21.4
B_CELL_NAIVE_10
21.4
B_CELL_NAIVE_11
21.2
B_CELL_NAIVE_12
21.1
B_CELL_NAIVE_13
20.5
B_CELL_NAIVE_14
20.4
B_CELL_NAIVE_15
19.8
B_CELL_NAIVE_16
19.8
B_CELL_NAIVE_17
19.8
B_CELL_NAIVE_18
19.8
B_CELL_NAIVE_19
19.6
B_CELL_NAIVE_20
19.5
B_CELL_NAIVE_21
19.4
B_CELL_NAIVE_22
19.1
B_CELL_NAIVE_23
19.1
B_CELL_NAIVE_24
19.0
B_CELL_NAIVE_25
19.0
B_CELL_NAIVE_26
18.9
B_CELL_NAIVE_27
18.8
B_CELL_NAIVE_28
18.8
B_CELL_NAIVE_29
18.8
B_CELL_NAIVE_30
18.4
B_CELL_NAIVE_31
18.4
B_CELL_NAIVE_32
18.4
B_CELL_NAIVE_33
18.4
B_CELL_NAIVE_34
18.3
B_CELL_NAIVE_35
18.1
B_CELL_NAIVE_36
18.0
B_CELL_NAIVE_37
17.9
B_CELL_NAIVE_38
17.9
B_CELL_NAIVE_39
17.9
B_CELL_NAIVE_40
17.5
B_CELL_NAIVE_41
17.5
B_CELL_NAIVE_42
17.5
B_CELL_NAIVE_43
17.4
B_CELL_NAIVE_44
17.2
B_CELL_NAIVE_45
17.1
B_CELL_NAIVE_46
17.1
B_CELL_NAIVE_47
17.0
B_CELL_NAIVE_48
16.8
B_CELL_NAIVE_49
16.7
B_CELL_NAIVE_50
16.5
B_CELL_NAIVE_51
16.4
B_CELL_NAIVE_52
16.4
B_CELL_NAIVE_53
16.4
B_CELL_NAIVE_54
16.2
B_CELL_NAIVE_55
16.1
B_CELL_NAIVE_56
16.1
B_CELL_NAIVE_57
15.7
B_CELL_NAIVE_58
15.7
B_CELL_NAIVE_59
15.7
B_CELL_NAIVE_60
15.7
B_CELL_NAIVE_61
15.6
B_CELL_NAIVE_62
15.6
B_CELL_NAIVE_63
15.6
B_CELL_NAIVE_64
15.5
B_CELL_NAIVE_65
15.4
B_CELL_NAIVE_66
15.4
B_CELL_NAIVE_67
15.4
B_CELL_NAIVE_68
15.4
B_CELL_NAIVE_69
15.3
B_CELL_NAIVE_70
15.2
B_CELL_NAIVE_71
15.2
B_CELL_NAIVE_72
15.1
B_CELL_NAIVE_73
15.0
B_CELL_NAIVE_74
14.9
B_CELL_NAIVE_75
14.9
B_CELL_NAIVE_76
14.8
B_CELL_NAIVE_77
14.7
B_CELL_NAIVE_78
14.5
B_CELL_NAIVE_79
14.5
B_CELL_NAIVE_80
14.3
B_CELL_NAIVE_81
14.3
B_CELL_NAIVE_82
14.0
B_CELL_NAIVE_83
14.0
B_CELL_NAIVE_84
13.9
B_CELL_NAIVE_85
13.9
B_CELL_NAIVE_86
13.9
B_CELL_NAIVE_87
13.8
B_CELL_NAIVE_88
13.7
B_CELL_NAIVE_89
13.7
B_CELL_NAIVE_90
11.5
B_CELL_NAIVE_91
11.4
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