A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.5
nTPM
Monaco:
22.1
nTPM
Schmiedel:
13.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.5
HPA sample
nTPM
Classical monocyte nTPM: 4.4
Samples: 6
Max nTPM: 7.1
Min nTPM: 3.3
P10809_1003
3.4
P10809_1020
5.6
P10809_1039
7.1
P10809_1058
3.3
P10809_1080
3.5
P10809_1107
3.7
Intermediate monocyte nTPM: 6.4
Samples: 6
Max nTPM: 8.6
Min nTPM: 3.3
P10809_1004
5.2
P10809_1023
8.6
P10809_1042
6.9
P10809_1061
3.3
P10809_1081
6.8
P10809_1108
7.8
Non-classical monocyte nTPM: 6.5
Samples: 5
Max nTPM: 10.4
Min nTPM: 0.0
P10809_1005
5.6
P10809_1053
10.4
P10809_1072
0.0
P10809_1082
7.6
P10809_1109
8.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.1
Monaco sample
nTPM
Classical monocyte nTPM: 18.0
Samples: 4
Max nTPM: 23.9
Min nTPM: 11.5
RHH5313_R3680
12.8
RHH5221_R3593
23.9
RHH5250_R3622
23.8
RHH5279_R3651
11.5
Intermediate monocyte nTPM: 22.2
Samples: 4
Max nTPM: 33.1
Min nTPM: 13.0
RHH5314_R3681
16.1
RHH5222_R3594
33.1
RHH5251_R3623
13.0
RHH5280_R3652
26.4
Non-classical monocyte nTPM: 21.5
Samples: 4
Max nTPM: 33.1
Min nTPM: 12.9
RHH5315_R3682
18.8
RHH5223_R3595
21.2
RHH5252_R3624
33.1
RHH5281_R3653
12.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.9
Schmiedel sample id
TPM
Classical monocyte TPM: 5.6
Samples: 91
Max TPM: 8.2
Min TPM: 3.4
MONOCYTES_1
8.2
MONOCYTES_2
7.8
MONOCYTES_3
7.6
MONOCYTES_4
7.4
MONOCYTES_5
7.3
MONOCYTES_6
7.0
MONOCYTES_7
6.8
MONOCYTES_8
6.8
MONOCYTES_9
6.8
MONOCYTES_10
6.6
MONOCYTES_11
6.6
MONOCYTES_12
6.6
MONOCYTES_13
6.5
MONOCYTES_14
6.5
MONOCYTES_15
6.5
MONOCYTES_16
6.5
MONOCYTES_17
6.4
MONOCYTES_18
6.3
MONOCYTES_19
6.3
MONOCYTES_20
6.2
MONOCYTES_21
6.2
MONOCYTES_22
6.1
MONOCYTES_23
6.1
MONOCYTES_24
6.0
MONOCYTES_25
6.0
MONOCYTES_26
5.9
MONOCYTES_27
5.9
MONOCYTES_28
5.8
MONOCYTES_29
5.8
MONOCYTES_30
5.8
MONOCYTES_31
5.7
MONOCYTES_32
5.7
MONOCYTES_33
5.7
MONOCYTES_34
5.7
MONOCYTES_35
5.7
MONOCYTES_36
5.7
MONOCYTES_37
5.6
MONOCYTES_38
5.6
MONOCYTES_39
5.6
MONOCYTES_40
5.6
MONOCYTES_41
5.6
MONOCYTES_42
5.5
MONOCYTES_43
5.5
MONOCYTES_44
5.5
MONOCYTES_45
5.5
MONOCYTES_46
5.5
MONOCYTES_47
5.5
MONOCYTES_48
5.4
MONOCYTES_49
5.4
MONOCYTES_50
5.4
MONOCYTES_51
5.4
MONOCYTES_52
5.3
MONOCYTES_53
5.3
MONOCYTES_54
5.3
MONOCYTES_55
5.3
MONOCYTES_56
5.3
MONOCYTES_57
5.3
MONOCYTES_58
5.3
MONOCYTES_59
5.2
MONOCYTES_60
5.2
MONOCYTES_61
5.2
MONOCYTES_62
5.2
MONOCYTES_63
5.2
MONOCYTES_64
5.1
MONOCYTES_65
5.1
MONOCYTES_66
5.1
MONOCYTES_67
5.1
MONOCYTES_68
5.1
MONOCYTES_69
5.1
MONOCYTES_70
5.1
MONOCYTES_71
5.1
MONOCYTES_72
5.0
MONOCYTES_73
5.0
MONOCYTES_74
5.0
MONOCYTES_75
5.0
MONOCYTES_76
4.8
MONOCYTES_77
4.8
MONOCYTES_78
4.8
MONOCYTES_79
4.8
MONOCYTES_80
4.7
MONOCYTES_81
4.7
MONOCYTES_82
4.5
MONOCYTES_83
4.5
MONOCYTES_84
4.5
MONOCYTES_85
4.4
MONOCYTES_86
4.3
MONOCYTES_87
4.2
MONOCYTES_88
4.2
MONOCYTES_89
4.1
MONOCYTES_90
3.8
MONOCYTES_91
3.4
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Non-classical monocyte TPM: 13.9
Samples: 90
Max TPM: 17.7
Min TPM: 9.7
M2_1
17.7
M2_2
17.5
M2_3
17.4
M2_4
17.4
M2_5
17.2
M2_6
16.6
M2_7
16.1
M2_8
16.1
M2_9
16.1
M2_10
16.0
M2_11
16.0
M2_12
15.9
M2_13
15.8
M2_14
15.8
M2_15
15.7
M2_16
15.7
M2_17
15.7
M2_18
15.6
M2_19
15.5
M2_20
15.4
M2_21
15.2
M2_22
15.2
M2_23
15.0
M2_24
15.0
M2_25
15.0
M2_26
15.0
M2_27
14.9
M2_28
14.9
M2_29
14.7
M2_30
14.6
M2_31
14.6
M2_32
14.6
M2_33
14.5
M2_34
14.5
M2_35
14.4
M2_36
14.4
M2_37
14.2
M2_38
14.2
M2_39
14.2
M2_40
13.9
M2_41
13.9
M2_42
13.9
M2_43
13.9
M2_44
13.7
M2_45
13.7
M2_46
13.7
M2_47
13.7
M2_48
13.6
M2_49
13.6
M2_50
13.6
M2_51
13.5
M2_52
13.4
M2_53
13.3
M2_54
13.3
M2_55
13.1
M2_56
13.1
M2_57
13.1
M2_58
13.0
M2_59
13.0
M2_60
12.9
M2_61
12.9
M2_62
12.9
M2_63
12.9
M2_64
12.8
M2_65
12.8
M2_66
12.8
M2_67
12.7
M2_68
12.6
M2_69
12.6
M2_70
12.6
M2_71
12.5
M2_72
12.5
M2_73
12.5
M2_74
12.4
M2_75
12.3
M2_76
12.3
M2_77
12.2
M2_78
12.2
M2_79
12.1
M2_80
11.9
M2_81
11.9
M2_82
11.5
M2_83
11.3
M2_84
11.3
M2_85
11.1
M2_86
11.1
M2_87
11.1
M2_88
10.9
M2_89
10.6
M2_90
9.7
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