A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.8
nTPM
Monaco:
29.5
nTPM
Schmiedel:
65.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.8
HPA sample
nTPM
NK-cell nTPM: 1.8
Samples: 6
Max nTPM: 4.7
Min nTPM: 0.6
P10809_1013
2.3
P10809_1033
1.2
P10809_1052
0.7
P10809_1071
1.4
P10809_1093
0.6
P10809_1103
4.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.5
Monaco sample
nTPM
NK-cell nTPM: 29.5
Samples: 4
Max nTPM: 35.0
Min nTPM: 22.4
RHH5316_R3683
30.9
RHH5224_R3596
22.4
RHH5253_R3625
35.0
RHH5282_R3654
29.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.7
Schmiedel sample id
TPM
NK-cell TPM: 65.7
Samples: 90
Max TPM: 98.3
Min TPM: 29.0
NK_1
98.3
NK_2
96.0
NK_3
95.5
NK_4
94.7
NK_5
93.7
NK_6
93.0
NK_7
92.3
NK_8
92.3
NK_9
92.1
NK_10
91.1
NK_11
90.5
NK_12
90.4
NK_13
89.1
NK_14
88.8
NK_15
88.2
NK_16
87.4
NK_17
84.1
NK_18
82.8
NK_19
82.1
NK_20
81.8
NK_21
81.8
NK_22
81.1
NK_23
81.0
NK_24
79.3
NK_25
76.8
NK_26
75.7
NK_27
74.7
NK_28
74.6
NK_29
73.4
NK_30
72.9
NK_31
71.7
NK_32
71.6
NK_33
71.5
NK_34
71.2
NK_35
70.6
NK_36
70.3
NK_37
70.2
NK_38
68.7
NK_39
68.6
NK_40
67.1
NK_41
66.7
NK_42
66.5
NK_43
66.5
NK_44
66.5
NK_45
66.3
NK_46
64.9
NK_47
64.4
NK_48
64.3
NK_49
63.2
NK_50
61.8
NK_51
61.6
NK_52
61.5
NK_53
61.0
NK_54
60.7
NK_55
59.8
NK_56
59.1
NK_57
59.1
NK_58
58.6
NK_59
56.2
NK_60
56.1
NK_61
55.5
NK_62
54.1
NK_63
53.9
NK_64
53.8
NK_65
53.8
NK_66
53.7
NK_67
53.4
NK_68
52.2
NK_69
51.2
NK_70
51.1
NK_71
50.3
NK_72
49.8
NK_73
49.2
NK_74
47.3
NK_75
46.9
NK_76
46.8
NK_77
46.8
NK_78
46.8
NK_79
46.1
NK_80
45.4
NK_81
44.0
NK_82
43.6
NK_83
42.4
NK_84
41.5
NK_85
40.9
NK_86
38.0
NK_87
36.5
NK_88
34.8
NK_89
32.3
NK_90
29.0
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