A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.1
nTPM
Monaco:
17.6
nTPM
Schmiedel:
25.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.1
HPA sample
nTPM
Classical monocyte nTPM: 1.8
Samples: 6
Max nTPM: 3.1
Min nTPM: 1.0
P10809_1003
3.1
P10809_1020
1.6
P10809_1039
1.0
P10809_1058
1.6
P10809_1080
1.8
P10809_1107
1.4
Intermediate monocyte nTPM: 1.7
Samples: 6
Max nTPM: 3.7
Min nTPM: 0.4
P10809_1004
3.7
P10809_1023
0.4
P10809_1042
1.5
P10809_1061
1.0
P10809_1081
1.3
P10809_1108
2.4
Non-classical monocyte nTPM: 4.1
Samples: 5
Max nTPM: 14.0
Min nTPM: 0.8
P10809_1005
2.9
P10809_1053
1.6
P10809_1072
14.0
P10809_1082
1.2
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.6
Monaco sample
nTPM
Classical monocyte nTPM: 16.5
Samples: 4
Max nTPM: 20.5
Min nTPM: 10.8
RHH5313_R3680
17.5
RHH5221_R3593
17.3
RHH5250_R3622
20.5
RHH5279_R3651
10.8
Intermediate monocyte nTPM: 14.2
Samples: 4
Max nTPM: 17.6
Min nTPM: 9.8
RHH5314_R3681
13.9
RHH5222_R3594
15.3
RHH5251_R3623
9.8
RHH5280_R3652
17.6
Non-classical monocyte nTPM: 17.6
Samples: 4
Max nTPM: 21.6
Min nTPM: 14.3
RHH5315_R3682
14.3
RHH5223_R3595
21.6
RHH5252_R3624
18.1
RHH5281_R3653
16.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.7
Schmiedel sample id
TPM
Classical monocyte TPM: 25.7
Samples: 91
Max TPM: 33.5
Min TPM: 15.6
MONOCYTES_1
33.5
MONOCYTES_2
33.2
MONOCYTES_3
32.3
MONOCYTES_4
32.3
MONOCYTES_5
31.8
MONOCYTES_6
31.7
MONOCYTES_7
31.7
MONOCYTES_8
31.4
MONOCYTES_9
31.3
MONOCYTES_10
31.2
MONOCYTES_11
31.1
MONOCYTES_12
31.0
MONOCYTES_13
31.0
MONOCYTES_14
30.5
MONOCYTES_15
30.3
MONOCYTES_16
30.3
MONOCYTES_17
30.2
MONOCYTES_18
30.1
MONOCYTES_19
30.0
MONOCYTES_20
30.0
MONOCYTES_21
29.6
MONOCYTES_22
29.6
MONOCYTES_23
29.3
MONOCYTES_24
29.2
MONOCYTES_25
28.9
MONOCYTES_26
28.9
MONOCYTES_27
28.7
MONOCYTES_28
28.5
MONOCYTES_29
28.1
MONOCYTES_30
27.8
MONOCYTES_31
27.7
MONOCYTES_32
27.7
MONOCYTES_33
27.6
MONOCYTES_34
27.2
MONOCYTES_35
27.0
MONOCYTES_36
26.9
MONOCYTES_37
26.9
MONOCYTES_38
26.8
MONOCYTES_39
26.6
MONOCYTES_40
26.5
MONOCYTES_41
26.4
MONOCYTES_42
26.4
MONOCYTES_43
26.4
MONOCYTES_44
26.3
MONOCYTES_45
26.3
MONOCYTES_46
26.3
MONOCYTES_47
26.2
MONOCYTES_48
25.8
MONOCYTES_49
25.7
MONOCYTES_50
25.7
MONOCYTES_51
25.7
MONOCYTES_52
25.7
MONOCYTES_53
25.6
MONOCYTES_54
25.0
MONOCYTES_55
25.0
MONOCYTES_56
24.9
MONOCYTES_57
24.8
MONOCYTES_58
24.4
MONOCYTES_59
24.4
MONOCYTES_60
24.1
MONOCYTES_61
23.9
MONOCYTES_62
23.8
MONOCYTES_63
23.6
MONOCYTES_64
23.4
MONOCYTES_65
23.4
MONOCYTES_66
23.3
MONOCYTES_67
23.3
MONOCYTES_68
23.3
MONOCYTES_69
22.9
MONOCYTES_70
22.8
MONOCYTES_71
22.8
MONOCYTES_72
22.6
MONOCYTES_73
22.4
MONOCYTES_74
22.4
MONOCYTES_75
22.4
MONOCYTES_76
21.9
MONOCYTES_77
21.0
MONOCYTES_78
20.5
MONOCYTES_79
20.3
MONOCYTES_80
20.0
MONOCYTES_81
19.7
MONOCYTES_82
19.5
MONOCYTES_83
19.5
MONOCYTES_84
19.1
MONOCYTES_85
18.9
MONOCYTES_86
17.7
MONOCYTES_87
17.7
MONOCYTES_88
16.6
MONOCYTES_89
16.5
MONOCYTES_90
16.4
MONOCYTES_91
15.6
Show allShow less
Non-classical monocyte TPM: 24.2
Samples: 90
Max TPM: 35.4
Min TPM: 10.5
M2_1
35.4
M2_2
34.4
M2_3
34.3
M2_4
33.7
M2_5
33.5
M2_6
32.2
M2_7
32.0
M2_8
31.2
M2_9
30.9
M2_10
30.6
M2_11
30.5
M2_12
30.3
M2_13
30.2
M2_14
30.2
M2_15
30.0
M2_16
29.7
M2_17
29.2
M2_18
29.0
M2_19
28.9
M2_20
28.7
M2_21
28.3
M2_22
28.3
M2_23
28.2
M2_24
28.2
M2_25
28.2
M2_26
28.1
M2_27
28.0
M2_28
27.8
M2_29
27.4
M2_30
27.3
M2_31
27.2
M2_32
27.2
M2_33
27.1
M2_34
26.6
M2_35
26.4
M2_36
26.4
M2_37
26.0
M2_38
25.9
M2_39
25.7
M2_40
25.4
M2_41
25.2
M2_42
25.0
M2_43
24.9
M2_44
24.9
M2_45
24.7
M2_46
24.7
M2_47
24.7
M2_48
24.7
M2_49
24.5
M2_50
24.1
M2_51
24.0
M2_52
23.9
M2_53
23.8
M2_54
23.5
M2_55
22.9
M2_56
22.5
M2_57
22.4
M2_58
22.3
M2_59
22.2
M2_60
22.1
M2_61
21.9
M2_62
21.8
M2_63
21.5
M2_64
21.5
M2_65
21.4
M2_66
21.3
M2_67
21.1
M2_68
21.0
M2_69
20.9
M2_70
20.6
M2_71
19.4
M2_72
19.3
M2_73
19.2
M2_74
18.8
M2_75
18.8
M2_76
18.4
M2_77
18.0
M2_78
17.5
M2_79
17.1
M2_80
16.6
M2_81
15.9
M2_82
14.8
M2_83
14.7
M2_84
14.3
M2_85
13.8
M2_86
13.7
M2_87
13.3
M2_88
11.9
M2_89
10.7
M2_90
10.5
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.