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BETA
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  • GCN1
IMMUNE CELL MONOCYTES Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
Monocytes
Immune cell methods
MONOCYTES - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:4.1 nTPM
Monaco:17.6 nTPM
Schmiedel:25.7 TPM

MONOCYTES - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

4.1
HPA sample nTPM
Classical monocyte
nTPM: 1.8
Samples: 6

Max nTPM: 3.1
Min nTPM: 1.0
P10809_1003 3.1
P10809_1020 1.6
P10809_1039 1.0
P10809_1058 1.6
P10809_1080 1.8
P10809_1107 1.4
Intermediate monocyte
nTPM: 1.7
Samples: 6

Max nTPM: 3.7
Min nTPM: 0.4
P10809_1004 3.7
P10809_1023 0.4
P10809_1042 1.5
P10809_1061 1.0
P10809_1081 1.3
P10809_1108 2.4
Non-classical monocyte
nTPM: 4.1
Samples: 5

Max nTPM: 14.0
Min nTPM: 0.8
P10809_1005 2.9
P10809_1053 1.6
P10809_1072 14.0
P10809_1082 1.2
P10809_1109 0.8

MONOCYTES - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

17.6
Monaco sample nTPM
Classical monocyte
nTPM: 16.5
Samples: 4

Max nTPM: 20.5
Min nTPM: 10.8
RHH5313_R3680 17.5
RHH5221_R3593 17.3
RHH5250_R3622 20.5
RHH5279_R3651 10.8
Intermediate monocyte
nTPM: 14.2
Samples: 4

Max nTPM: 17.6
Min nTPM: 9.8
RHH5314_R3681 13.9
RHH5222_R3594 15.3
RHH5251_R3623 9.8
RHH5280_R3652 17.6
Non-classical monocyte
nTPM: 17.6
Samples: 4

Max nTPM: 21.6
Min nTPM: 14.3
RHH5315_R3682 14.3
RHH5223_R3595 21.6
RHH5252_R3624 18.1
RHH5281_R3653 16.2

MONOCYTES - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

25.7
Schmiedel sample id TPM
Classical monocyte
TPM: 25.7
Samples: 91

Max TPM: 33.5
Min TPM: 15.6
MONOCYTES_1 33.5
MONOCYTES_2 33.2
MONOCYTES_3 32.3
MONOCYTES_4 32.3
MONOCYTES_5 31.8
MONOCYTES_6 31.7
MONOCYTES_7 31.7
MONOCYTES_8 31.4
MONOCYTES_9 31.3
MONOCYTES_10 31.2
MONOCYTES_11 31.1
MONOCYTES_12 31.0
MONOCYTES_13 31.0
MONOCYTES_14 30.5
MONOCYTES_15 30.3
MONOCYTES_16 30.3
MONOCYTES_17 30.2
MONOCYTES_18 30.1
MONOCYTES_19 30.0
MONOCYTES_20 30.0
MONOCYTES_21 29.6
MONOCYTES_22 29.6
MONOCYTES_23 29.3
MONOCYTES_24 29.2
MONOCYTES_25 28.9
MONOCYTES_26 28.9
MONOCYTES_27 28.7
MONOCYTES_28 28.5
MONOCYTES_29 28.1
MONOCYTES_30 27.8
MONOCYTES_31 27.7
MONOCYTES_32 27.7
MONOCYTES_33 27.6
MONOCYTES_34 27.2
MONOCYTES_35 27.0
MONOCYTES_36 26.9
MONOCYTES_37 26.9
MONOCYTES_38 26.8
MONOCYTES_39 26.6
MONOCYTES_40 26.5
MONOCYTES_41 26.4
MONOCYTES_42 26.4
MONOCYTES_43 26.4
MONOCYTES_44 26.3
MONOCYTES_45 26.3
MONOCYTES_46 26.3
MONOCYTES_47 26.2
MONOCYTES_48 25.8
MONOCYTES_49 25.7
MONOCYTES_50 25.7
MONOCYTES_51 25.7
MONOCYTES_52 25.7
MONOCYTES_53 25.6
MONOCYTES_54 25.0
MONOCYTES_55 25.0
MONOCYTES_56 24.9
MONOCYTES_57 24.8
MONOCYTES_58 24.4
MONOCYTES_59 24.4
MONOCYTES_60 24.1
MONOCYTES_61 23.9
MONOCYTES_62 23.8
MONOCYTES_63 23.6
MONOCYTES_64 23.4
MONOCYTES_65 23.4
MONOCYTES_66 23.3
MONOCYTES_67 23.3
MONOCYTES_68 23.3
MONOCYTES_69 22.9
MONOCYTES_70 22.8
MONOCYTES_71 22.8
MONOCYTES_72 22.6
MONOCYTES_73 22.4
MONOCYTES_74 22.4
MONOCYTES_75 22.4
MONOCYTES_76 21.9
MONOCYTES_77 21.0
MONOCYTES_78 20.5
MONOCYTES_79 20.3
MONOCYTES_80 20.0
MONOCYTES_81 19.7
MONOCYTES_82 19.5
MONOCYTES_83 19.5
MONOCYTES_84 19.1
MONOCYTES_85 18.9
MONOCYTES_86 17.7
MONOCYTES_87 17.7
MONOCYTES_88 16.6
MONOCYTES_89 16.5
MONOCYTES_90 16.4
MONOCYTES_91 15.6
Show allShow less
Non-classical monocyte
TPM: 24.2
Samples: 90

Max TPM: 35.4
Min TPM: 10.5
M2_1 35.4
M2_2 34.4
M2_3 34.3
M2_4 33.7
M2_5 33.5
M2_6 32.2
M2_7 32.0
M2_8 31.2
M2_9 30.9
M2_10 30.6
M2_11 30.5
M2_12 30.3
M2_13 30.2
M2_14 30.2
M2_15 30.0
M2_16 29.7
M2_17 29.2
M2_18 29.0
M2_19 28.9
M2_20 28.7
M2_21 28.3
M2_22 28.3
M2_23 28.2
M2_24 28.2
M2_25 28.2
M2_26 28.1
M2_27 28.0
M2_28 27.8
M2_29 27.4
M2_30 27.3
M2_31 27.2
M2_32 27.2
M2_33 27.1
M2_34 26.6
M2_35 26.4
M2_36 26.4
M2_37 26.0
M2_38 25.9
M2_39 25.7
M2_40 25.4
M2_41 25.2
M2_42 25.0
M2_43 24.9
M2_44 24.9
M2_45 24.7
M2_46 24.7
M2_47 24.7
M2_48 24.7
M2_49 24.5
M2_50 24.1
M2_51 24.0
M2_52 23.9
M2_53 23.8
M2_54 23.5
M2_55 22.9
M2_56 22.5
M2_57 22.4
M2_58 22.3
M2_59 22.2
M2_60 22.1
M2_61 21.9
M2_62 21.8
M2_63 21.5
M2_64 21.5
M2_65 21.4
M2_66 21.3
M2_67 21.1
M2_68 21.0
M2_69 20.9
M2_70 20.6
M2_71 19.4
M2_72 19.3
M2_73 19.2
M2_74 18.8
M2_75 18.8
M2_76 18.4
M2_77 18.0
M2_78 17.5
M2_79 17.1
M2_80 16.6
M2_81 15.9
M2_82 14.8
M2_83 14.7
M2_84 14.3
M2_85 13.8
M2_86 13.7
M2_87 13.3
M2_88 11.9
M2_89 10.7
M2_90 10.5
Show allShow less

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