MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:542.7 nTPM
HPA Brain:282.9 nTPM
GTEx:542.7 nTPM
FANTOM5:32.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 282.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 272.7
2586 Male, age 75, left hemisphere 394.7
2666 Male, age 74, left hemisphere 342.0
1870 Female, age 42, unknown 282.6
2828 Female, age 72, unknown 278.7
2411 Female, age 72, unknown 272.4
1827 Male, age 72, unknown 249.9
1830 Male, age 51, unknown 246.4
1833 Male, age 53, unknown 242.3
2019 Male, age 18, unknown 236.3
2219 Male, age 76, both hemispheres 181.7
Dorsal raphe nucleus
nTPM: 271.2
2016 Female, age 72, unknown 297.3
2298 Female, age 72, unknown 283.1
2750 Male, age 76, both hemispheres 264.7
2047 Male, age 72, unknown 262.8
1828 Male, age 53, unknown 248.3
Inferior colliculus
nTPM: 244.8
1848 Female, age 42, unknown 261.1
1890 Male, age 53, unknown 257.8
2849 Male, age 72, unknown 232.2
2097 Female, age 72, unknown 228.2
Median raphe nucleus
nTPM: 242.4
2220 Male, age 76, midline 242.4
Periaquaductal grey, anterior
nTPM: 277.0
2502 Female, age 75, unknown 301.4
1947 Male, age 18, unknown 273.2
1795 Male, age 51, unknown 256.5
Periaquaductal grey, dorsal
nTPM: 253.9
1840 Male, age 53, unknown 291.9
2464 Female, age 72, unknown 257.6
1831 Male, age 72, unknown 248.6
2850 Male, age 76, both hemispheres 217.5
Periaquaductal grey, lateral
nTPM: 240.7
2053 Male, age 18, unknown 293.3
2140 Male, age 76, both hemispheres 230.8
2272 Male, age 74, both hemispheres 198.1
Pretectal area
nTPM: 230.8
2407 Male, age 75, both hemispheres 271.6
2825 Male, age 18, unknown 260.9
2316 Male, age 76, right hemisphere 246.8
1815 Male, age 53, unknown 242.9
2224 Female, age 72, unknown 234.7
1817 Female, age 42, unknown 231.1
2007 Male, age 72, unknown 224.7
1816 Male, age 51, unknown 214.6
2273 Male, age 74, both hemispheres 208.0
2667 Female, age 75, unknown 204.5
1944 Female, age 72, unknown 198.9
Red nucleus
nTPM: 273.5
2584 Male, age 75, left hemisphere 359.6
1865 Male, age 51, unknown 309.9
2503 Female, age 72, unknown 291.7
1904 Male, age 53, unknown 287.7
2227 Male, age 72, unknown 279.7
1821 Female, age 72, unknown 276.3
2769 Male, age 72, unknown 275.7
1954 Female, age 42, unknown 258.7
2725 Female, age 75, unknown 245.8
2588 Male, age 74, left hemisphere 236.7
2785 Male, age 18, unknown 234.2
2823 Male, age 76, right hemisphere 225.9
Substantia nigra
nTPM: 282.9
2590 Female, age 75, unknown 327.9
2665 Male, age 74, both hemispheres 326.4
2583 Male, age 75, right hemisphere 314.1
1851 Male, age 51, unknown 312.3
2241 Male, age 72, unknown 290.6
1916 Female, age 42, unknown 287.6
2699 Male, age 18, unknown 284.9
1941 Male, age 53, unknown 239.0
1889 Female, age 72, unknown 225.9
2409 Female, age 72, unknown 220.3
Superior colliculus
nTPM: 265.4
2664 Male, age 75, both hemispheres 356.1
1995 Male, age 72, unknown 290.7
1913 Female, age 42, unknown 288.0
2587 Male, age 74, left hemisphere 279.1
1839 Male, age 51, unknown 260.2
2668 Female, age 75, unknown 255.0
1796 Male, age 53, unknown 252.5
2261 Male, age 18, unknown 243.9
2087 Female, age 72, unknown 225.1
1895 Male, age 76, right hemisphere 203.0
Ventral tegmental area
nTPM: 277.7
2021 Male, age 53, unknown 296.6
1915 Female, age 42, unknown 294.3
2223 Female, age 72, unknown 284.2
2410 Female, age 72, unknown 277.8
1942 Male, age 51, unknown 274.4
2218 Male, age 76, both hemispheres 238.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 542.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 542.7
Samples: 183

Max nTPM: 1174.1
Min nTPM: 227.2
Std nTPM: 183.3
Median nTPM: 510.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1174.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1115.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1083.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1070.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1057.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1037.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1025.6
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 974.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 927.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 891.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 885.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.5
FF:10158-103A5 76 years, female 32.5

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