A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
51.9
nTPM
Monaco:
381.5
nTPM
Schmiedel:
285.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.9
HPA sample
nTPM
NK-cell nTPM: 51.9
Samples: 6
Max nTPM: 69.3
Min nTPM: 31.9
P10809_1013
56.2
P10809_1033
31.9
P10809_1052
63.9
P10809_1071
49.3
P10809_1093
41.0
P10809_1103
69.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
381.5
Monaco sample
nTPM
NK-cell nTPM: 381.5
Samples: 4
Max nTPM: 505.0
Min nTPM: 324.6
RHH5316_R3683
348.6
RHH5224_R3596
505.0
RHH5253_R3625
347.8
RHH5282_R3654
324.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
285.9
Schmiedel sample id
TPM
NK-cell TPM: 285.9
Samples: 90
Max TPM: 481.7
Min TPM: 115.3
NK_1
481.7
NK_2
479.7
NK_3
468.7
NK_4
465.2
NK_5
456.8
NK_6
442.9
NK_7
424.5
NK_8
424.4
NK_9
422.3
NK_10
419.9
NK_11
415.8
NK_12
405.9
NK_13
401.8
NK_14
391.8
NK_15
382.6
NK_16
378.5
NK_17
373.8
NK_18
370.4
NK_19
370.1
NK_20
368.5
NK_21
365.0
NK_22
346.9
NK_23
340.1
NK_24
339.5
NK_25
338.3
NK_26
338.0
NK_27
336.8
NK_28
332.4
NK_29
330.1
NK_30
325.7
NK_31
324.4
NK_32
321.7
NK_33
317.1
NK_34
313.7
NK_35
313.2
NK_36
313.1
NK_37
305.4
NK_38
296.7
NK_39
293.4
NK_40
289.8
NK_41
287.6
NK_42
287.0
NK_43
282.8
NK_44
282.5
NK_45
281.6
NK_46
279.6
NK_47
273.1
NK_48
269.9
NK_49
266.4
NK_50
262.6
NK_51
262.5
NK_52
261.7
NK_53
258.1
NK_54
255.2
NK_55
249.0
NK_56
247.6
NK_57
246.4
NK_58
245.5
NK_59
242.2
NK_60
232.0
NK_61
230.4
NK_62
228.3
NK_63
227.8
NK_64
227.1
NK_65
225.4
NK_66
223.8
NK_67
223.3
NK_68
222.7
NK_69
216.4
NK_70
208.6
NK_71
207.6
NK_72
206.4
NK_73
205.8
NK_74
204.6
NK_75
201.2
NK_76
198.1
NK_77
190.3
NK_78
186.5
NK_79
179.2
NK_80
175.2
NK_81
166.1
NK_82
158.8
NK_83
151.8
NK_84
149.4
NK_85
146.5
NK_86
142.5
NK_87
140.1
NK_88
139.9
NK_89
131.4
NK_90
115.3
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