A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
44.2
nTPM
Monaco:
202.9
nTPM
Schmiedel:
100.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.2
HPA sample
nTPM
Classical monocyte nTPM: 44.2
Samples: 6
Max nTPM: 76.3
Min nTPM: 23.3
P10809_1003
76.3
P10809_1020
42.6
P10809_1039
23.3
P10809_1058
35.0
P10809_1080
41.5
P10809_1107
46.2
Intermediate monocyte nTPM: 15.7
Samples: 6
Max nTPM: 20.5
Min nTPM: 11.7
P10809_1004
20.5
P10809_1023
11.7
P10809_1042
18.9
P10809_1061
11.7
P10809_1081
13.9
P10809_1108
17.3
Non-classical monocyte nTPM: 0.8
Samples: 5
Max nTPM: 1.3
Min nTPM: 0.2
P10809_1005
1.3
P10809_1053
0.2
P10809_1072
0.3
P10809_1082
1.2
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
202.9
Monaco sample
nTPM
Classical monocyte nTPM: 203.0
Samples: 4
Max nTPM: 219.4
Min nTPM: 178.6
RHH5313_R3680
212.5
RHH5221_R3593
219.4
RHH5250_R3622
201.3
RHH5279_R3651
178.6
Intermediate monocyte nTPM: 74.3
Samples: 4
Max nTPM: 109.6
Min nTPM: 37.8
RHH5314_R3681
78.8
RHH5222_R3594
109.6
RHH5251_R3623
37.8
RHH5280_R3652
70.9
Non-classical monocyte nTPM: 10.9
Samples: 4
Max nTPM: 13.5
Min nTPM: 6.9
RHH5315_R3682
6.9
RHH5223_R3595
12.3
RHH5252_R3624
13.5
RHH5281_R3653
10.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
100.2
Schmiedel sample id
TPM
Classical monocyte TPM: 100.2
Samples: 91
Max TPM: 134.3
Min TPM: 61.5
MONOCYTES_1
134.3
MONOCYTES_2
132.7
MONOCYTES_3
131.1
MONOCYTES_4
131.1
MONOCYTES_5
129.2
MONOCYTES_6
128.6
MONOCYTES_7
127.4
MONOCYTES_8
127.0
MONOCYTES_9
126.3
MONOCYTES_10
125.5
MONOCYTES_11
123.6
MONOCYTES_12
122.1
MONOCYTES_13
122.1
MONOCYTES_14
120.8
MONOCYTES_15
119.9
MONOCYTES_16
119.9
MONOCYTES_17
118.2
MONOCYTES_18
117.7
MONOCYTES_19
117.6
MONOCYTES_20
116.6
MONOCYTES_21
116.0
MONOCYTES_22
114.6
MONOCYTES_23
114.0
MONOCYTES_24
114.0
MONOCYTES_25
113.9
MONOCYTES_26
113.5
MONOCYTES_27
112.9
MONOCYTES_28
112.3
MONOCYTES_29
110.8
MONOCYTES_30
110.8
MONOCYTES_31
110.6
MONOCYTES_32
110.5
MONOCYTES_33
110.0
MONOCYTES_34
109.7
MONOCYTES_35
109.2
MONOCYTES_36
109.1
MONOCYTES_37
108.8
MONOCYTES_38
108.6
MONOCYTES_39
106.3
MONOCYTES_40
105.8
MONOCYTES_41
105.7
MONOCYTES_42
105.3
MONOCYTES_43
104.2
MONOCYTES_44
102.7
MONOCYTES_45
100.1
MONOCYTES_46
99.6
MONOCYTES_47
98.8
MONOCYTES_48
98.7
MONOCYTES_49
98.4
MONOCYTES_50
97.6
MONOCYTES_51
97.4
MONOCYTES_52
96.1
MONOCYTES_53
96.1
MONOCYTES_54
95.5
MONOCYTES_55
94.2
MONOCYTES_56
94.1
MONOCYTES_57
94.0
MONOCYTES_58
92.5
MONOCYTES_59
92.0
MONOCYTES_60
91.0
MONOCYTES_61
90.8
MONOCYTES_62
90.3
MONOCYTES_63
90.0
MONOCYTES_64
89.1
MONOCYTES_65
88.4
MONOCYTES_66
88.4
MONOCYTES_67
86.2
MONOCYTES_68
86.0
MONOCYTES_69
85.9
MONOCYTES_70
84.9
MONOCYTES_71
84.9
MONOCYTES_72
84.6
MONOCYTES_73
83.4
MONOCYTES_74
83.3
MONOCYTES_75
82.8
MONOCYTES_76
81.3
MONOCYTES_77
81.3
MONOCYTES_78
79.1
MONOCYTES_79
79.0
MONOCYTES_80
78.4
MONOCYTES_81
76.1
MONOCYTES_82
75.7
MONOCYTES_83
73.5
MONOCYTES_84
68.0
MONOCYTES_85
68.0
MONOCYTES_86
67.1
MONOCYTES_87
66.9
MONOCYTES_88
65.2
MONOCYTES_89
64.8
MONOCYTES_90
62.4
MONOCYTES_91
61.5
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Non-classical monocyte TPM: 2.2
Samples: 90
Max TPM: 8.9
Min TPM: 0.1
M2_1
8.9
M2_2
7.6
M2_3
5.1
M2_4
5.0
M2_5
4.9
M2_6
4.3
M2_7
4.1
M2_8
4.1
M2_9
3.9
M2_10
3.7
M2_11
3.5
M2_12
3.4
M2_13
3.2
M2_14
3.0
M2_15
3.0
M2_16
3.0
M2_17
3.0
M2_18
3.0
M2_19
2.9
M2_20
2.8
M2_21
2.8
M2_22
2.8
M2_23
2.7
M2_24
2.7
M2_25
2.6
M2_26
2.5
M2_27
2.5
M2_28
2.5
M2_29
2.5
M2_30
2.4
M2_31
2.4
M2_32
2.2
M2_33
2.2
M2_34
2.1
M2_35
2.1
M2_36
2.1
M2_37
2.1
M2_38
2.0
M2_39
2.0
M2_40
2.0
M2_41
2.0
M2_42
2.0
M2_43
1.9
M2_44
1.9
M2_45
1.9
M2_46
1.9
M2_47
1.8
M2_48
1.8
M2_49
1.7
M2_50
1.7
M2_51
1.7
M2_52
1.7
M2_53
1.7
M2_54
1.7
M2_55
1.7
M2_56
1.7
M2_57
1.6
M2_58
1.6
M2_59
1.6
M2_60
1.6
M2_61
1.5
M2_62
1.5
M2_63
1.5
M2_64
1.5
M2_65
1.4
M2_66
1.4
M2_67
1.3
M2_68
1.3
M2_69
1.3
M2_70
1.3
M2_71
1.3
M2_72
1.2
M2_73
1.2
M2_74
1.2
M2_75
1.2
M2_76
1.2
M2_77
1.2
M2_78
1.2
M2_79
1.1
M2_80
1.1
M2_81
1.1
M2_82
1.1
M2_83
1.0
M2_84
1.0
M2_85
0.9
M2_86
0.9
M2_87
0.9
M2_88
0.9
M2_89
0.9
M2_90
0.1
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