On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.6
nTPM
HPA Brain:
100.8
nTPM
GTEx:
9.6
nTPM
FANTOM5:
29.8
Scaled Tags Per Million
Macaque:
81.0
nTPM
Mouse:
268.7
nTPM
Rat:
189.6
nTPM
Pig:
31.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
13330
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
4545
Spinal cord_03
9232
Spinal cord_04
25263
Spinal cord_05
37406
Spinal cord_06
ND
Spinal cord_07
12048
Spinal cord_08
14612
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
100.8
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 49.9
2819
Male, age 47, both hemispheres
79.5
2734
Male, age 80, both hemispheres
50.1
2818
Female, age 79, both hemispheres
36.4
2193
Male, age 75, both hemispheres
33.7
Cervical spinal cord, central gray nTPM: 54.6
2194
Female, age 79, both hemispheres
78.5
1981
Female, age 72, midline
52.0
2816
Male, age 47, midline
50.9
2048
Male, age 55, midline
47.8
2565
Male, age 75, midline
44.0
Cervical spinal cord, dorsal horn nTPM: 100.8
2297
Male, age 75, both hemispheres
219.0
2721
Male, age 90, both hemispheres
142.9
1877
Male, age 55, unknown
95.9
2069
Male, age 47, both hemispheres
78.1
2173
Female, age 72, unknown
45.9
2296
Male, age 66, both hemispheres
23.0
Cervical spinal cord, ventral horn nTPM: 63.4
2820
Female, age 79, both hemispheres
111.7
2068
Male, age 55, unknown
80.8
2480
Male, age 75, both hemispheres
73.7
2295
Male, age 66, both hemispheres
55.7
2809
Male, age 90, both hemispheres
38.1
2098
Female, age 72, unknown
20.2
Dorsal funiculus (white matter) nTPM: 21.8
2812
Male, age 66, both hemispheres
35.8
2810
Male, age 90, both hemispheres
21.1
2064
Female, age 79, both hemispheres
19.7
2128
Male, age 75, both hemispheres
19.5
2817
Male, age 47, both hemispheres
12.8
Lateral funiculus (white matter) nTPM: 34.8
2294
Male, age 66, both hemispheres
63.6
2192
Male, age 75, both hemispheres
28.0
2099
Male, age 90, both hemispheres
25.0
2094
Female, age 79, both hemispheres
22.7
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.6
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 9.6
Samples: 204
Max nTPM: 80.0
Min nTPM: 0.4
Std nTPM: 11.4
Median nTPM: 5.7
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
80.0
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
66.1
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
57.5
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
42.6
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
37.7
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
35.5
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
34.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
34.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
34.4
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
33.0
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
30.8
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
28.7
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
28.5
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
28.4
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
24.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
24.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
24.0
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
23.4
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
23.2
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
23.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
22.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
22.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
22.3
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
22.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
21.7
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
21.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
20.9
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
20.7
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
20.6
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
20.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
20.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
20.1
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
19.9
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
19.8
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
19.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
18.7
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
18.3
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
18.1
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
17.9
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
17.8
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
16.7
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
16.5
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
16.2
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
16.0
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
15.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
14.6
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
14.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
14.2
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
14.1
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
12.8
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
12.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
11.8
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
11.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
11.4
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
11.2
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
11.2
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
11.1
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
11.0
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
10.8
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
10.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
10.6
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
10.5
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
10.3
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
10.3
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
10.1
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
10.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
9.8
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
9.6
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
9.4
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
9.1
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
8.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
8.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
8.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
8.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
8.7
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
8.6
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
8.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
8.1
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
8.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
7.8
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
7.7
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
7.7
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
7.6
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
7.5
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
7.5
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
7.2
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
7.0
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
7.0
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
6.8
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
6.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
6.7
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
6.7
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
6.7
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
6.6
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
6.6
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
6.5
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
6.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
6.4
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
6.0
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
5.8
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
5.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
5.7
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
5.6
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
5.6
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
5.5
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
5.5
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
5.5
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
5.5
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
5.5
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
5.4
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
5.2
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
4.9
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
4.8
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
4.7
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
4.7
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
4.6
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
4.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
4.1
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
4.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
4.1
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
4.0
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
4.0
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
4.0
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
3.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
3.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
3.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
3.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
3.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
3.5
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
3.5
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
3.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
3.4
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
3.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
3.2
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
3.1
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
3.1
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
3.0
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
3.0
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
2.9
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
2.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
2.8
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
2.7
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
2.6
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
2.6
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
2.5
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
2.5
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
2.5
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
2.5
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
2.5
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
2.5
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
2.5
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
2.3
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
2.2
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
2.2
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
2.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
2.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
2.0
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
2.0
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1.8
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1.8
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1.7
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
1.7
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1.7
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1.7
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
1.7
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
1.6
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1.6
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1.6
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
1.4
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1.2
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
1.2
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
1.1
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
1.1
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
1.1
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1.1
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
1.1
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1.1
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1.0
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1.0
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
1.0
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
1.0
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
1.0
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
1.0
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
1.0
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
0.9
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
0.9
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
0.8
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
0.8
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
0.8
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
0.8
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
0.7
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
0.7
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
0.7
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
0.6
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
0.6
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
0.6
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
0.6
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
0.6
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
0.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
0.5
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
0.5
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
0.5
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
0.4
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
0.4
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
81.0
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 81.0
Samples: 2
Max nTPM: 106.3
Min nTPM: 55.6
Sample A
55.6
Sample B
106.3
Ventral spinal cord nTPM: 61.7
Samples: 1
Max nTPM: 61.7
Min nTPM: 61.7
Sample A
61.7
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 24.5
Samples: 4
Max nTPM: 47.2
Min nTPM: 3.6
Sample A
Female
47.2
Sample B
Female
10.5
Sample C
Male
3.6
Sample D
Male
36.8
Ventral spinal cord nTPM: 31.8
Samples: 4
Max nTPM: 40.2
Min nTPM: 14.3
Sample A
Female
39.8
Sample B
Female
32.9
Sample C
Male
40.2
Sample D
Male
14.3
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
268.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 268.7
Samples: 4
Max nTPM: 297.2
Min nTPM: 247.1
Sample A
247.1
Sample B
297.2
Sample C
256.4
Sample D
274.0
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
189.6
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 189.6
Samples: 4
Max nTPM: 198.8
Min nTPM: 170.2
Sample A
198.8
Sample A
196.2
Sample A
193.3
Sample A
170.2
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The Human Protein Atlas project is funded
