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PEBP1
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  • TISSUE

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  • PEBP1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:962.5 nTPM
HPA Brain:786.2 nTPM
GTEx:962.5 nTPM
FANTOM5:737.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

786.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 720.1
1981 Female, age 72, midline 920.0
2194 Female, age 79, both hemispheres 724.3
2048 Male, age 55, midline 674.4
2565 Male, age 75, midline 643.1
2816 Male, age 47, midline 638.9
Cervical spinal cord, dorsal horn
nTPM: 786.2
2173 Female, age 72, unknown 992.9
2296 Male, age 66, both hemispheres 981.1
2069 Male, age 47, both hemispheres 880.6
2297 Male, age 75, both hemispheres 674.1
1877 Male, age 55, unknown 635.1
2721 Male, age 90, both hemispheres 553.2
Cervical spinal cord, ventral horn
nTPM: 756.9
2098 Female, age 72, unknown 906.7
2480 Male, age 75, both hemispheres 849.8
2295 Male, age 66, both hemispheres 811.8
2809 Male, age 90, both hemispheres 736.8
2068 Male, age 55, unknown 670.8
2820 Female, age 79, both hemispheres 565.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

962.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 962.5
Samples: 204

Max nTPM: 1830.6
Min nTPM: 580.5
Std nTPM: 210.6
Median nTPM: 926.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1830.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1797.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1664.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1540.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1470.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1411.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1410.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1388.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1385.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1381.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1371.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1332.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1303.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1302.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1268.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1253.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1248.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1236.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1226.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1220.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1219.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1217.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1217.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1215.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1214.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1211.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1199.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1186.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1165.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1163.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1148.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1148.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1144.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1141.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1140.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1124.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1124.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1120.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1116.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1112.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1102.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1099.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1097.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1094.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1090.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1090.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1088.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1086.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1081.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1076.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1075.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1071.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1069.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1066.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1060.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1059.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1058.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1049.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1046.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1043.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1040.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1036.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1035.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1033.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1032.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1030.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1028.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1028.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1027.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1024.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1014.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1011.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 999.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 995.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 994.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 993.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 987.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 986.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 981.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 977.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 976.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 975.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 974.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 974.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 969.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 969.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 967.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 966.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 963.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 960.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 958.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 957.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 955.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 953.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 946.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 943.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 942.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 937.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 933.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 930.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 928.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 928.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 925.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 922.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 921.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 919.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 918.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 917.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 916.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 914.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 913.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 913.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 911.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 910.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 910.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 909.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 909.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 907.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 906.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 905.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 903.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 900.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 898.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 890.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 889.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 887.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 887.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 884.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 884.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 883.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 883.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 883.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 881.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 878.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 873.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 873.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 873.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 864.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 858.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 857.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 856.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 855.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 855.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 851.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 849.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 843.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 841.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 841.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 836.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 833.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 833.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 832.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 831.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 828.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 822.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 820.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 820.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 813.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 810.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 805.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 804.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 801.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 799.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 792.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 792.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 791.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 784.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 771.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 765.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 762.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 759.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 759.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 752.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 748.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 747.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 746.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 742.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 742.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 739.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 736.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 733.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 727.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 725.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 723.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 715.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 715.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 698.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 696.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 694.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 689.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 682.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 681.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 674.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 673.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 663.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 661.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 649.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 644.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 641.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 620.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 612.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 593.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 582.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 580.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

737.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 737.4
FF:10181-103D1 60 years, female 939.1
FF:10159-103A6 76 years, female 535.7

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