BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:913.3 nTPM
HPA Brain:708.9 nTPM
GTEx:913.3 nTPM
FANTOM5:718.1 Scaled Tags Per Million
Macaque:293.8 nTPM
Mouse:0.0 nTPM
Rat:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 708.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 592.8
2019 Male, age 18, unknown 776.2
2411 Female, age 72, unknown 677.9
1827 Male, age 72, unknown 649.4
2828 Female, age 72, unknown 619.4
2586 Male, age 75, left hemisphere 618.9
1870 Female, age 42, unknown 590.8
1833 Male, age 53, unknown 526.6
1830 Male, age 51, unknown 518.9
2666 Male, age 74, left hemisphere 481.4
2219 Male, age 76, both hemispheres 468.4
Dorsal raphe nucleus
nTPM: 607.9
2298 Female, age 72, unknown 741.7
2750 Male, age 76, both hemispheres 635.1
2047 Male, age 72, unknown 571.5
1828 Male, age 53, unknown 556.2
2016 Female, age 72, unknown 535.0
Inferior colliculus
nTPM: 575.7
2097 Female, age 72, unknown 687.3
1848 Female, age 42, unknown 567.0
1890 Male, age 53, unknown 560.8
2849 Male, age 72, unknown 487.8
Median raphe nucleus
nTPM: 629.9
2220 Male, age 76, midline 629.9
Periaquaductal grey, anterior
nTPM: 617.5
2502 Female, age 75, unknown 675.6
1795 Male, age 51, unknown 609.3
1947 Male, age 18, unknown 567.6
Periaquaductal grey, dorsal
nTPM: 522.2
2464 Female, age 72, unknown 574.6
1840 Male, age 53, unknown 519.9
1831 Male, age 72, unknown 507.1
2850 Male, age 76, both hemispheres 487.3
Periaquaductal grey, lateral
nTPM: 532.5
2272 Male, age 74, both hemispheres 572.3
2053 Male, age 18, unknown 546.2
2140 Male, age 76, both hemispheres 478.9
Pretectal area
nTPM: 708.9
1817 Female, age 42, unknown 892.6
2007 Male, age 72, unknown 887.3
1816 Male, age 51, unknown 855.9
1944 Female, age 72, unknown 818.6
1815 Male, age 53, unknown 781.3
2667 Female, age 75, unknown 721.8
2273 Male, age 74, both hemispheres 669.7
2224 Female, age 72, unknown 614.3
2316 Male, age 76, right hemisphere 538.4
2407 Male, age 75, both hemispheres 514.3
2825 Male, age 18, unknown 504.0
Red nucleus
nTPM: 613.4
2785 Male, age 18, unknown 753.1
1821 Female, age 72, unknown 728.0
2503 Female, age 72, unknown 688.3
1954 Female, age 42, unknown 605.1
2725 Female, age 75, unknown 596.1
2823 Male, age 76, right hemisphere 594.3
1865 Male, age 51, unknown 593.3
2227 Male, age 72, unknown 582.5
1904 Male, age 53, unknown 575.8
2769 Male, age 72, unknown 569.7
2588 Male, age 74, left hemisphere 537.5
2584 Male, age 75, left hemisphere 536.6
Substantia nigra
nTPM: 584.0
1889 Female, age 72, unknown 726.8
1916 Female, age 42, unknown 662.8
1941 Male, age 53, unknown 661.8
1851 Male, age 51, unknown 617.7
2241 Male, age 72, unknown 594.5
2583 Male, age 75, right hemisphere 559.4
2409 Female, age 72, unknown 539.0
2590 Female, age 75, unknown 518.3
2665 Male, age 74, both hemispheres 501.9
2699 Male, age 18, unknown 457.9
Superior colliculus
nTPM: 604.3
2087 Female, age 72, unknown 724.4
2261 Male, age 18, unknown 675.0
1796 Male, age 53, unknown 640.9
2668 Female, age 75, unknown 602.3
1995 Male, age 72, unknown 589.0
2587 Male, age 74, left hemisphere 587.8
1913 Female, age 42, unknown 587.1
1839 Male, age 51, unknown 551.5
2664 Male, age 75, both hemispheres 549.7
1895 Male, age 76, right hemisphere 535.5
Ventral tegmental area
nTPM: 583.6
2410 Female, age 72, unknown 627.8
2223 Female, age 72, unknown 608.1
1915 Female, age 42, unknown 600.5
1942 Male, age 51, unknown 566.6
2021 Male, age 53, unknown 555.0
2218 Male, age 76, both hemispheres 543.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 913.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 913.3
Samples: 183

Max nTPM: 1730.5
Min nTPM: 364.0
Std nTPM: 192.7
Median nTPM: 885.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1730.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1577.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1506.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1479.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1424.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1415.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1388.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1383.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1281.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1260.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1259.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 718.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 718.1
FF:10158-103A5 76 years, female 718.1

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 293.8
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 205.7
Samples: 1

Max nTPM: 205.7
Min nTPM: 205.7
Sample A 205.7
Midbrain
nTPM: 217.0
Samples: 1

Max nTPM: 217.0
Min nTPM: 217.0
Sample A 217.0
Superior colliculi
nTPM: 293.8
Samples: 1

Max nTPM: 293.8
Min nTPM: 293.8
Sample A 293.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A 0.0
Sample B 0.0
Sample C 0.0
Sample D 0.0

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 0.0
Rat sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.0

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