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BETA
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  • ERP29
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:265.2 nTPM
Monaco:487.8 nTPM
Schmiedel:163.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

265.2
HPA sample nTPM
Memory B-cell
nTPM: 260.1
Samples: 6

Max nTPM: 342.9
Min nTPM: 213.3
P10809_1017 213.3
P10809_1025 228.9
P10809_1044 342.9
P10809_1063 240.1
P10809_1092 306.2
P10809_1105 228.9
Naive B-cell
nTPM: 265.2
Samples: 6

Max nTPM: 380.2
Min nTPM: 172.4
P10809_1011 172.4
P10809_1029 257.6
P10809_1048 380.2
P10809_1067 249.6
P10809_1091 305.4
P10809_1104 226.2

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

487.8
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 292.7
Samples: 4

Max nTPM: 381.3
Min nTPM: 168.0
RHH5310_R3677 358.5
RHH5218_R3590 262.9
RHH5247_R3619 381.3
RHH5276_R3648 168.0
Naive B-cell
nTPM: 330.5
Samples: 4

Max nTPM: 392.0
Min nTPM: 256.3
RHH5308_R3675 392.0
RHH5216_R3588 387.8
RHH5245_R3617 256.3
RHH5274_R3646 285.8
Non-switched memory B-cell
nTPM: 361.2
Samples: 4

Max nTPM: 437.2
Min nTPM: 238.8
RHH5309_R3676 385.4
RHH5217_R3589 383.5
RHH5246_R3618 437.2
RHH5275_R3647 238.8
Plasmablast
nTPM: 487.8
Samples: 4

Max nTPM: 542.6
Min nTPM: 430.7
RHH5312_R3679 513.7
RHH5220_R3592 542.6
RHH5249_R3621 464.0
RHH5278_R3650 430.7
Switched memory B-cell
nTPM: 313.1
Samples: 4

Max nTPM: 429.3
Min nTPM: 185.7
RHH5311_R3678 429.3
RHH5219_R3591 380.0
RHH5248_R3620 257.3
RHH5277_R3649 185.7

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

163.9
Schmiedel sample id TPM
Naive B-cell
TPM: 163.9
Samples: 91

Max TPM: 202.8
Min TPM: 113.7
B_CELL_NAIVE_1 202.8
B_CELL_NAIVE_2 198.8
B_CELL_NAIVE_3 198.0
B_CELL_NAIVE_4 197.2
B_CELL_NAIVE_5 193.4
B_CELL_NAIVE_6 187.7
B_CELL_NAIVE_7 187.1
B_CELL_NAIVE_8 187.0
B_CELL_NAIVE_9 186.1
B_CELL_NAIVE_10 185.1
B_CELL_NAIVE_11 184.9
B_CELL_NAIVE_12 184.2
B_CELL_NAIVE_13 184.0
B_CELL_NAIVE_14 183.7
B_CELL_NAIVE_15 183.4
B_CELL_NAIVE_16 181.8
B_CELL_NAIVE_17 181.1
B_CELL_NAIVE_18 180.5
B_CELL_NAIVE_19 179.4
B_CELL_NAIVE_20 179.0
B_CELL_NAIVE_21 178.9
B_CELL_NAIVE_22 178.0
B_CELL_NAIVE_23 177.6
B_CELL_NAIVE_24 176.9
B_CELL_NAIVE_25 174.7
B_CELL_NAIVE_26 174.4
B_CELL_NAIVE_27 174.2
B_CELL_NAIVE_28 171.4
B_CELL_NAIVE_29 170.9
B_CELL_NAIVE_30 170.5
B_CELL_NAIVE_31 169.8
B_CELL_NAIVE_32 169.8
B_CELL_NAIVE_33 169.7
B_CELL_NAIVE_34 168.8
B_CELL_NAIVE_35 168.8
B_CELL_NAIVE_36 168.5
B_CELL_NAIVE_37 168.0
B_CELL_NAIVE_38 167.3
B_CELL_NAIVE_39 166.8
B_CELL_NAIVE_40 165.8
B_CELL_NAIVE_41 165.7
B_CELL_NAIVE_42 165.1
B_CELL_NAIVE_43 164.6
B_CELL_NAIVE_44 163.6
B_CELL_NAIVE_45 163.6
B_CELL_NAIVE_46 163.3
B_CELL_NAIVE_47 162.8
B_CELL_NAIVE_48 162.5
B_CELL_NAIVE_49 162.4
B_CELL_NAIVE_50 161.9
B_CELL_NAIVE_51 161.8
B_CELL_NAIVE_52 161.6
B_CELL_NAIVE_53 161.4
B_CELL_NAIVE_54 161.3
B_CELL_NAIVE_55 160.6
B_CELL_NAIVE_56 160.0
B_CELL_NAIVE_57 159.6
B_CELL_NAIVE_58 158.6
B_CELL_NAIVE_59 158.4
B_CELL_NAIVE_60 158.4
B_CELL_NAIVE_61 158.3
B_CELL_NAIVE_62 157.9
B_CELL_NAIVE_63 157.0
B_CELL_NAIVE_64 155.3
B_CELL_NAIVE_65 154.9
B_CELL_NAIVE_66 154.2
B_CELL_NAIVE_67 153.5
B_CELL_NAIVE_68 153.1
B_CELL_NAIVE_69 152.6
B_CELL_NAIVE_70 152.3
B_CELL_NAIVE_71 152.3
B_CELL_NAIVE_72 151.7
B_CELL_NAIVE_73 151.4
B_CELL_NAIVE_74 151.0
B_CELL_NAIVE_75 149.6
B_CELL_NAIVE_76 148.8
B_CELL_NAIVE_77 148.1
B_CELL_NAIVE_78 146.3
B_CELL_NAIVE_79 145.9
B_CELL_NAIVE_80 145.8
B_CELL_NAIVE_81 145.2
B_CELL_NAIVE_82 141.4
B_CELL_NAIVE_83 141.3
B_CELL_NAIVE_84 141.0
B_CELL_NAIVE_85 137.5
B_CELL_NAIVE_86 136.3
B_CELL_NAIVE_87 135.2
B_CELL_NAIVE_88 130.8
B_CELL_NAIVE_89 126.3
B_CELL_NAIVE_90 114.6
B_CELL_NAIVE_91 113.7
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