A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
265.2
nTPM
Monaco:
487.8
nTPM
Schmiedel:
163.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
265.2
HPA sample
nTPM
Memory B-cell nTPM: 260.1
Samples: 6
Max nTPM: 342.9
Min nTPM: 213.3
P10809_1017
213.3
P10809_1025
228.9
P10809_1044
342.9
P10809_1063
240.1
P10809_1092
306.2
P10809_1105
228.9
Naive B-cell nTPM: 265.2
Samples: 6
Max nTPM: 380.2
Min nTPM: 172.4
P10809_1011
172.4
P10809_1029
257.6
P10809_1048
380.2
P10809_1067
249.6
P10809_1091
305.4
P10809_1104
226.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
487.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 292.7
Samples: 4
Max nTPM: 381.3
Min nTPM: 168.0
RHH5310_R3677
358.5
RHH5218_R3590
262.9
RHH5247_R3619
381.3
RHH5276_R3648
168.0
Naive B-cell nTPM: 330.5
Samples: 4
Max nTPM: 392.0
Min nTPM: 256.3
RHH5308_R3675
392.0
RHH5216_R3588
387.8
RHH5245_R3617
256.3
RHH5274_R3646
285.8
Non-switched memory B-cell nTPM: 361.2
Samples: 4
Max nTPM: 437.2
Min nTPM: 238.8
RHH5309_R3676
385.4
RHH5217_R3589
383.5
RHH5246_R3618
437.2
RHH5275_R3647
238.8
Plasmablast nTPM: 487.8
Samples: 4
Max nTPM: 542.6
Min nTPM: 430.7
RHH5312_R3679
513.7
RHH5220_R3592
542.6
RHH5249_R3621
464.0
RHH5278_R3650
430.7
Switched memory B-cell nTPM: 313.1
Samples: 4
Max nTPM: 429.3
Min nTPM: 185.7
RHH5311_R3678
429.3
RHH5219_R3591
380.0
RHH5248_R3620
257.3
RHH5277_R3649
185.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.9
Schmiedel sample id
TPM
Naive B-cell TPM: 163.9
Samples: 91
Max TPM: 202.8
Min TPM: 113.7
B_CELL_NAIVE_1
202.8
B_CELL_NAIVE_2
198.8
B_CELL_NAIVE_3
198.0
B_CELL_NAIVE_4
197.2
B_CELL_NAIVE_5
193.4
B_CELL_NAIVE_6
187.7
B_CELL_NAIVE_7
187.1
B_CELL_NAIVE_8
187.0
B_CELL_NAIVE_9
186.1
B_CELL_NAIVE_10
185.1
B_CELL_NAIVE_11
184.9
B_CELL_NAIVE_12
184.2
B_CELL_NAIVE_13
184.0
B_CELL_NAIVE_14
183.7
B_CELL_NAIVE_15
183.4
B_CELL_NAIVE_16
181.8
B_CELL_NAIVE_17
181.1
B_CELL_NAIVE_18
180.5
B_CELL_NAIVE_19
179.4
B_CELL_NAIVE_20
179.0
B_CELL_NAIVE_21
178.9
B_CELL_NAIVE_22
178.0
B_CELL_NAIVE_23
177.6
B_CELL_NAIVE_24
176.9
B_CELL_NAIVE_25
174.7
B_CELL_NAIVE_26
174.4
B_CELL_NAIVE_27
174.2
B_CELL_NAIVE_28
171.4
B_CELL_NAIVE_29
170.9
B_CELL_NAIVE_30
170.5
B_CELL_NAIVE_31
169.8
B_CELL_NAIVE_32
169.8
B_CELL_NAIVE_33
169.7
B_CELL_NAIVE_34
168.8
B_CELL_NAIVE_35
168.8
B_CELL_NAIVE_36
168.5
B_CELL_NAIVE_37
168.0
B_CELL_NAIVE_38
167.3
B_CELL_NAIVE_39
166.8
B_CELL_NAIVE_40
165.8
B_CELL_NAIVE_41
165.7
B_CELL_NAIVE_42
165.1
B_CELL_NAIVE_43
164.6
B_CELL_NAIVE_44
163.6
B_CELL_NAIVE_45
163.6
B_CELL_NAIVE_46
163.3
B_CELL_NAIVE_47
162.8
B_CELL_NAIVE_48
162.5
B_CELL_NAIVE_49
162.4
B_CELL_NAIVE_50
161.9
B_CELL_NAIVE_51
161.8
B_CELL_NAIVE_52
161.6
B_CELL_NAIVE_53
161.4
B_CELL_NAIVE_54
161.3
B_CELL_NAIVE_55
160.6
B_CELL_NAIVE_56
160.0
B_CELL_NAIVE_57
159.6
B_CELL_NAIVE_58
158.6
B_CELL_NAIVE_59
158.4
B_CELL_NAIVE_60
158.4
B_CELL_NAIVE_61
158.3
B_CELL_NAIVE_62
157.9
B_CELL_NAIVE_63
157.0
B_CELL_NAIVE_64
155.3
B_CELL_NAIVE_65
154.9
B_CELL_NAIVE_66
154.2
B_CELL_NAIVE_67
153.5
B_CELL_NAIVE_68
153.1
B_CELL_NAIVE_69
152.6
B_CELL_NAIVE_70
152.3
B_CELL_NAIVE_71
152.3
B_CELL_NAIVE_72
151.7
B_CELL_NAIVE_73
151.4
B_CELL_NAIVE_74
151.0
B_CELL_NAIVE_75
149.6
B_CELL_NAIVE_76
148.8
B_CELL_NAIVE_77
148.1
B_CELL_NAIVE_78
146.3
B_CELL_NAIVE_79
145.9
B_CELL_NAIVE_80
145.8
B_CELL_NAIVE_81
145.2
B_CELL_NAIVE_82
141.4
B_CELL_NAIVE_83
141.3
B_CELL_NAIVE_84
141.0
B_CELL_NAIVE_85
137.5
B_CELL_NAIVE_86
136.3
B_CELL_NAIVE_87
135.2
B_CELL_NAIVE_88
130.8
B_CELL_NAIVE_89
126.3
B_CELL_NAIVE_90
114.6
B_CELL_NAIVE_91
113.7
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.