MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.3 nTPM
HPA Brain:67.0 nTPM
GTEx:62.3 nTPM
FANTOM5:127.9 Scaled Tags Per Million
Pig:79.1 nTPM
Mouse:155.4 nTPM
Allen mouse:7.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.2
1870 Female, age 42, unknown 68.5
2411 Female, age 72, unknown 64.5
1827 Male, age 72, unknown 61.2
2019 Male, age 18, unknown 61.1
1833 Male, age 53, unknown 60.5
2828 Female, age 72, unknown 58.5
1830 Male, age 51, unknown 55.7
2586 Male, age 75, left hemisphere 52.1
2219 Male, age 76, both hemispheres 51.8
2666 Male, age 74, left hemisphere 38.5
Dorsal raphe nucleus
nTPM: 58.0
2298 Female, age 72, unknown 68.2
2750 Male, age 76, both hemispheres 63.4
1828 Male, age 53, unknown 60.3
2047 Male, age 72, unknown 50.7
2016 Female, age 72, unknown 47.2
Inferior colliculus
nTPM: 64.1
2849 Male, age 72, unknown 71.6
2097 Female, age 72, unknown 63.3
1848 Female, age 42, unknown 61.2
1890 Male, age 53, unknown 60.2
Median raphe nucleus
nTPM: 67.0
2220 Male, age 76, midline 67.0
Periaquaductal grey, anterior
nTPM: 59.8
2502 Female, age 75, unknown 67.6
1795 Male, age 51, unknown 55.9
1947 Male, age 18, unknown 55.8
Periaquaductal grey, dorsal
nTPM: 59.9
2850 Male, age 76, both hemispheres 69.4
1840 Male, age 53, unknown 63.9
1831 Male, age 72, unknown 58.2
2464 Female, age 72, unknown 48.3
Periaquaductal grey, lateral
nTPM: 51.0
2140 Male, age 76, both hemispheres 54.9
2053 Male, age 18, unknown 53.3
2272 Male, age 74, both hemispheres 44.8
Pretectal area
nTPM: 63.1
1817 Female, age 42, unknown 73.2
2007 Male, age 72, unknown 69.7
1816 Male, age 51, unknown 68.5
2667 Female, age 75, unknown 66.9
1944 Female, age 72, unknown 64.0
1815 Male, age 53, unknown 63.0
2407 Male, age 75, both hemispheres 62.3
2224 Female, age 72, unknown 62.1
2825 Male, age 18, unknown 60.3
2273 Male, age 74, both hemispheres 53.8
2316 Male, age 76, right hemisphere 50.7
Red nucleus
nTPM: 64.5
1821 Female, age 72, unknown 73.1
2725 Female, age 75, unknown 71.2
1865 Male, age 51, unknown 68.8
2227 Male, age 72, unknown 67.3
2503 Female, age 72, unknown 66.4
2769 Male, age 72, unknown 66.2
2785 Male, age 18, unknown 63.0
1954 Female, age 42, unknown 62.5
2823 Male, age 76, right hemisphere 62.0
1904 Male, age 53, unknown 61.3
2588 Male, age 74, left hemisphere 58.6
2584 Male, age 75, left hemisphere 53.9
Substantia nigra
nTPM: 53.8
1889 Female, age 72, unknown 68.2
1916 Female, age 42, unknown 61.7
2665 Male, age 74, both hemispheres 59.1
1851 Male, age 51, unknown 58.5
2699 Male, age 18, unknown 55.9
1941 Male, age 53, unknown 50.6
2590 Female, age 75, unknown 50.1
2583 Male, age 75, right hemisphere 49.3
2409 Female, age 72, unknown 44.1
2241 Male, age 72, unknown 40.5
Superior colliculus
nTPM: 61.0
2587 Male, age 74, left hemisphere 69.1
1913 Female, age 42, unknown 67.4
1895 Male, age 76, right hemisphere 67.1
1796 Male, age 53, unknown 66.9
1995 Male, age 72, unknown 63.4
2087 Female, age 72, unknown 62.9
1839 Male, age 51, unknown 58.0
2261 Male, age 18, unknown 57.8
2664 Male, age 75, both hemispheres 49.3
2668 Female, age 75, unknown 47.9
Ventral tegmental area
nTPM: 57.9
2223 Female, age 72, unknown 63.9
2410 Female, age 72, unknown 61.9
2218 Male, age 76, both hemispheres 60.1
1915 Female, age 42, unknown 60.0
1942 Male, age 51, unknown 50.7
2021 Male, age 53, unknown 50.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.3
Samples: 183

Max nTPM: 107.5
Min nTPM: 15.7
Std nTPM: 17.6
Median nTPM: 60.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 107.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 106.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 101.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 101.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 100.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 100.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 100.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 98.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 97.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 97.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 91.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 127.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.9
FF:10158-103A5 76 years, female 127.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 79.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.1
Samples: 4

Max nTPM: 73.5
Min nTPM: 68.1
Sample A Female 69.3
Sample B Female 68.1
Sample C Male 73.3
Sample D Male 73.5
Midbrain
nTPM: 79.1
Samples: 4

Max nTPM: 106.9
Min nTPM: 58.8
Sample A Female 106.9
Sample B Female 75.4
Sample C Male 75.4
Sample D Male 58.8
Periaqueductal gray
nTPM: 75.6
Samples: 3

Max nTPM: 84.2
Min nTPM: 61.6
Sample B Female 81.0
Sample C Male 84.2
Sample D Male 61.6
Superior colliculi
nTPM: 72.1
Samples: 4

Max nTPM: 79.7
Min nTPM: 63.7
Sample A Female 76.8
Sample B Female 63.7
Sample C Male 79.7
Sample D Male 68.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 155.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 155.5
Samples: 4

Max nTPM: 169.8
Min nTPM: 149.5
Sample A Male 169.8
Sample B Male 152.9
Sample C Female 149.6
Sample D Female 149.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
68301512 Antisense, RP_041130_01_D05, Mouse strain C57BL/6J (56 days, male) 14.0
69527830 Antisense, RP_050421_02_E08, Mouse strain C57BL/6J (56 days, male) 0.1

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