A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.0
nTPM
Monaco:
28.9
nTPM
Schmiedel:
45.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.0
HPA sample
nTPM
NK-cell nTPM: 12.0
Samples: 6
Max nTPM: 18.0
Min nTPM: 3.8
P10809_1013
12.6
P10809_1033
18.0
P10809_1052
16.2
P10809_1071
9.2
P10809_1093
3.8
P10809_1103
12.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.9
Monaco sample
nTPM
NK-cell nTPM: 28.9
Samples: 4
Max nTPM: 37.0
Min nTPM: 23.2
RHH5316_R3683
37.0
RHH5224_R3596
23.2
RHH5253_R3625
28.1
RHH5282_R3654
27.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.6
Schmiedel sample id
TPM
NK-cell TPM: 45.6
Samples: 90
Max TPM: 73.3
Min TPM: 16.4
NK_1
73.3
NK_2
72.8
NK_3
71.6
NK_4
70.6
NK_5
69.2
NK_6
68.3
NK_7
67.6
NK_8
66.9
NK_9
66.8
NK_10
66.5
NK_11
66.2
NK_12
63.9
NK_13
63.4
NK_14
62.4
NK_15
62.3
NK_16
60.3
NK_17
59.5
NK_18
59.2
NK_19
57.9
NK_20
57.4
NK_21
56.9
NK_22
56.7
NK_23
56.2
NK_24
55.1
NK_25
54.7
NK_26
54.5
NK_27
54.2
NK_28
53.7
NK_29
53.4
NK_30
52.8
NK_31
52.7
NK_32
52.4
NK_33
52.0
NK_34
51.2
NK_35
49.1
NK_36
48.7
NK_37
48.5
NK_38
47.7
NK_39
47.4
NK_40
47.3
NK_41
47.2
NK_42
45.9
NK_43
45.3
NK_44
45.2
NK_45
45.1
NK_46
44.6
NK_47
44.0
NK_48
44.0
NK_49
43.7
NK_50
43.5
NK_51
43.0
NK_52
41.8
NK_53
40.4
NK_54
40.1
NK_55
39.9
NK_56
39.8
NK_57
39.7
NK_58
38.9
NK_59
37.8
NK_60
37.7
NK_61
37.5
NK_62
37.1
NK_63
37.1
NK_64
37.1
NK_65
37.0
NK_66
36.9
NK_67
35.5
NK_68
35.1
NK_69
34.3
NK_70
34.2
NK_71
33.8
NK_72
33.5
NK_73
33.0
NK_74
32.3
NK_75
31.1
NK_76
30.9
NK_77
30.6
NK_78
30.3
NK_79
28.7
NK_80
28.5
NK_81
28.3
NK_82
28.1
NK_83
27.0
NK_84
25.6
NK_85
23.6
NK_86
23.3
NK_87
22.5
NK_88
18.0
NK_89
17.9
NK_90
16.4
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