A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.7
nTPM
Monaco:
23.2
nTPM
Schmiedel:
47.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.7
HPA sample
nTPM
Classical monocyte nTPM: 5.8
Samples: 6
Max nTPM: 7.6
Min nTPM: 4.4
P10809_1003
6.2
P10809_1020
7.3
P10809_1039
4.7
P10809_1058
4.8
P10809_1080
4.4
P10809_1107
7.6
Intermediate monocyte nTPM: 9.0
Samples: 6
Max nTPM: 12.4
Min nTPM: 5.0
P10809_1004
9.3
P10809_1023
12.1
P10809_1042
12.4
P10809_1061
5.0
P10809_1081
6.5
P10809_1108
9.0
Non-classical monocyte nTPM: 17.7
Samples: 5
Max nTPM: 24.5
Min nTPM: 11.1
P10809_1005
19.9
P10809_1053
19.0
P10809_1072
11.1
P10809_1082
14.1
P10809_1109
24.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.2
Monaco sample
nTPM
Classical monocyte nTPM: 14.2
Samples: 4
Max nTPM: 18.3
Min nTPM: 11.2
RHH5313_R3680
13.2
RHH5221_R3593
13.9
RHH5250_R3622
18.3
RHH5279_R3651
11.2
Intermediate monocyte nTPM: 23.2
Samples: 4
Max nTPM: 35.3
Min nTPM: 10.1
RHH5314_R3681
10.1
RHH5222_R3594
26.2
RHH5251_R3623
35.3
RHH5280_R3652
21.0
Non-classical monocyte nTPM: 21.7
Samples: 4
Max nTPM: 27.8
Min nTPM: 17.0
RHH5315_R3682
17.8
RHH5223_R3595
24.1
RHH5252_R3624
27.8
RHH5281_R3653
17.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.0
Schmiedel sample id
TPM
Classical monocyte TPM: 16.4
Samples: 91
Max TPM: 25.1
Min TPM: 9.0
MONOCYTES_1
25.1
MONOCYTES_2
23.6
MONOCYTES_3
23.4
MONOCYTES_4
23.2
MONOCYTES_5
23.1
MONOCYTES_6
22.9
MONOCYTES_7
22.5
MONOCYTES_8
22.5
MONOCYTES_9
22.4
MONOCYTES_10
22.0
MONOCYTES_11
21.8
MONOCYTES_12
20.9
MONOCYTES_13
20.9
MONOCYTES_14
20.7
MONOCYTES_15
20.5
MONOCYTES_16
20.4
MONOCYTES_17
20.4
MONOCYTES_18
20.3
MONOCYTES_19
19.8
MONOCYTES_20
19.8
MONOCYTES_21
19.3
MONOCYTES_22
18.8
MONOCYTES_23
18.7
MONOCYTES_24
18.7
MONOCYTES_25
18.5
MONOCYTES_26
18.2
MONOCYTES_27
18.0
MONOCYTES_28
18.0
MONOCYTES_29
17.9
MONOCYTES_30
17.6
MONOCYTES_31
17.4
MONOCYTES_32
17.4
MONOCYTES_33
17.4
MONOCYTES_34
17.3
MONOCYTES_35
17.1
MONOCYTES_36
16.9
MONOCYTES_37
16.9
MONOCYTES_38
16.8
MONOCYTES_39
16.8
MONOCYTES_40
16.7
MONOCYTES_41
16.6
MONOCYTES_42
16.5
MONOCYTES_43
16.5
MONOCYTES_44
16.4
MONOCYTES_45
16.2
MONOCYTES_46
16.0
MONOCYTES_47
15.8
MONOCYTES_48
15.8
MONOCYTES_49
15.7
MONOCYTES_50
15.7
MONOCYTES_51
15.6
MONOCYTES_52
15.6
MONOCYTES_53
15.5
MONOCYTES_54
15.4
MONOCYTES_55
15.4
MONOCYTES_56
15.4
MONOCYTES_57
15.3
MONOCYTES_58
14.9
MONOCYTES_59
14.7
MONOCYTES_60
14.7
MONOCYTES_61
14.7
MONOCYTES_62
14.6
MONOCYTES_63
14.5
MONOCYTES_64
14.4
MONOCYTES_65
14.3
MONOCYTES_66
14.2
MONOCYTES_67
14.2
MONOCYTES_68
14.0
MONOCYTES_69
13.9
MONOCYTES_70
13.9
MONOCYTES_71
13.7
MONOCYTES_72
13.6
MONOCYTES_73
13.5
MONOCYTES_74
13.2
MONOCYTES_75
13.0
MONOCYTES_76
12.8
MONOCYTES_77
12.8
MONOCYTES_78
12.6
MONOCYTES_79
12.5
MONOCYTES_80
12.1
MONOCYTES_81
12.0
MONOCYTES_82
11.9
MONOCYTES_83
11.8
MONOCYTES_84
11.6
MONOCYTES_85
11.6
MONOCYTES_86
11.1
MONOCYTES_87
10.3
MONOCYTES_88
9.8
MONOCYTES_89
9.2
MONOCYTES_90
9.0
MONOCYTES_91
9.0
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Non-classical monocyte TPM: 47.0
Samples: 90
Max TPM: 80.2
Min TPM: 12.1
M2_1
80.2
M2_2
74.9
M2_3
72.2
M2_4
71.5
M2_5
68.2
M2_6
67.7
M2_7
67.3
M2_8
67.2
M2_9
66.7
M2_10
65.3
M2_11
64.4
M2_12
64.0
M2_13
63.9
M2_14
63.8
M2_15
63.6
M2_16
63.5
M2_17
63.5
M2_18
63.3
M2_19
62.2
M2_20
62.0
M2_21
61.4
M2_22
60.0
M2_23
59.8
M2_24
59.1
M2_25
58.7
M2_26
58.2
M2_27
56.8
M2_28
56.3
M2_29
55.3
M2_30
54.3
M2_31
54.2
M2_32
54.1
M2_33
53.7
M2_34
53.4
M2_35
53.4
M2_36
52.6
M2_37
51.9
M2_38
51.9
M2_39
50.5
M2_40
49.2
M2_41
49.2
M2_42
47.6
M2_43
47.6
M2_44
47.3
M2_45
46.2
M2_46
45.0
M2_47
44.7
M2_48
44.5
M2_49
44.3
M2_50
44.1
M2_51
42.7
M2_52
41.8
M2_53
41.7
M2_54
41.4
M2_55
41.3
M2_56
41.1
M2_57
40.0
M2_58
40.0
M2_59
40.0
M2_60
39.2
M2_61
38.7
M2_62
38.1
M2_63
37.9
M2_64
37.8
M2_65
37.5
M2_66
37.4
M2_67
36.3
M2_68
36.2
M2_69
36.1
M2_70
35.6
M2_71
35.0
M2_72
33.7
M2_73
32.6
M2_74
31.6
M2_75
31.6
M2_76
30.9
M2_77
30.4
M2_78
30.1
M2_79
29.4
M2_80
28.5
M2_81
28.1
M2_82
27.0
M2_83
26.7
M2_84
26.2
M2_85
26.1
M2_86
25.2
M2_87
23.7
M2_88
18.5
M2_89
17.6
M2_90
12.1
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